Imas002616.1
Basic Information
- Insect
- Incurvaria masculella
- Gene Symbol
- -
- Assembly
- GCA_946894085.1
- Location
- CAMPPJ020000019.1:1624888-1636237[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.9 3.1e+02 3.0 0.2 1 23 84 107 84 107 0.90 2 15 0.012 0.94 11.0 0.1 2 23 136 158 135 158 0.93 3 15 3.4 2.7e+02 3.2 0.5 1 23 251 274 251 274 0.85 4 15 0.06 4.9 8.7 2.1 1 19 283 301 283 306 0.87 5 15 0.83 68 5.1 1.1 8 23 356 372 347 372 0.88 6 15 3.8 3.1e+02 3.1 0.8 1 23 410 433 410 433 0.85 7 15 2e-05 0.0016 19.7 1.9 1 23 439 461 439 461 0.97 8 15 0.0025 0.2 13.1 3.7 1 23 469 491 469 491 0.97 9 15 3.1e-05 0.0025 19.1 3.1 1 23 496 518 496 518 0.98 10 15 0.0001 0.0084 17.4 2.8 1 23 524 546 524 546 0.99 11 15 1.9e-07 1.6e-05 26.0 2.5 1 23 552 574 552 574 0.97 12 15 0.00019 0.015 16.6 3.0 2 23 581 602 581 602 0.98 13 15 3.8e-06 0.00031 21.9 0.6 2 23 609 631 608 631 0.97 14 15 0.015 1.3 10.6 0.0 2 23 639 660 638 660 0.97 15 15 2.4 2e+02 3.7 3.5 2 23 667 689 666 689 0.95
Sequence Information
- Coding Sequence
- ATGTCTTCAGACTCTGATGAACCGCTCTCGGCTCTTAAAGAAAAGGGTCCAGCTCCGTCCACGTCTCAAGAACCTGAGGGCAAAGTGAAAAAATCTCACAAGCGCAAAAAGAAGAAGGTTAAAAAGCTAAAGCTGGCCCTGCGTGCAGCCAGTCACGGCAGGAATGTGCGTTATTACGCCTCTCAATCGGAAGTCGAGCGACCACAAGACGTGTGGTTGTACATGAAAGACTTGAATCCGACGGGGCCTTACAGCTGCCTCCTCTGCACCGAGTGGTTTATCAATAAGATGAAACTGGTCGTTCATTACGTTCTCAATCATAAGAAGGACTACTGTGGCATTTGCAGATACTTTGTGGAAAACCGCGAGACGTGGGTTCTGCACTCGGAGTTTCACACGCCGGTGACATGCTCACAGTGCCCGGAGCAGTTCCCCAGCGATTCGGAGCTGCGCGTGCATTTTGCGCGGGAACACCTGTCCGTTCACTGTCGCTTCTGCTGCTTCATGATGCCTGTGGACCAATACAACCATCACCTTTTCCAGAAACACGCCATCACTAATGTTGTCAACAAAGATGAGCCCATCTTGTGGGACACAGAGTACGATGGAAAAGAGTTGGCCGAATTCGACGATCTGTGGCTGTGTCAGTTCTGCGACATGGAGTTCGACTGCCGGGAGAATTCCAGGAAGCACCTCAGCGAACATTGGAGCGAACTGAGAATCGACAACTGCTTCAGCCCTCATTTAGGCTACAAATGCCGCTATTGCCCAACTTTGTTTTGGAATGAAACAGATAGAGAGGGACACCAGAACCGGGTGCATATGGCTAAGCACAAGGAAGACTTTTATAGATGTGTGGAATGTTCAAAAATGTTTAGTGACAAGATCTGGTTCGTGTACCACTGCCTCCGGGAGCACCCCAAGGCCCCGCAACCTAACGTGTACATGATGAAGTGCGCAGTGTGCTGCTCTGTGTTCCCGTCAGTTGATGGCATCAAGGAGCATTTTGCCAGCGAACATCCAGAGGCCAAGAAGATATTCTGCTCGCTTGGCTCCTGCAAACTTCGGCCATTTAGTCAGAACAAATCATTTCGGATGCATCTGCAGACGTTCCACGGGCGCGCGGCGCGGCCGCAGGAGGGCGCCTCGTGCATCGTGTGCGCGCGCGAGTTCCCGAGCGCGCGCGCGTGCAGCGCGCACACGGCGCTCGCGCACGGCCCCGGCCGCTTCAAGTGCAAGCTCTGCGGGGACACGCTGCAGAGCTCCGACGAGAGGAAGCTTCACTTCATGCTGCAGCACCCGGGACAGAACCCGTACGAGTGCAACTTGTGTGGCAAGACCTTCCAGAACAAGTCGTCTCTGTACCTTCACCGCTCTCAGCATGTCAATCCCGAGCGTCAGAGCTTCACCTGCAAGTACTGCGGGAAACACTTCCTGAAAAAGGACTCATTCCGTGAGCACGTTCTGATTCACGAAGGCCCGCGTCACACCTGCTCCTACTGCCCCATGACGTTCGTGCAGCGCTCCAACATGCTCCGGCATGAGCGGCGCCACACTGGCGAGCGGCCTTACACCTGCCTGCACTGCGGTCGCGCCTTCTCCGACAAAGGCGCCTGCAACTCGCACATGAGAATTCACACACCTCACGAAGTACACCCCTGCCCATATTGCGGCCGAACATTCGCCCAGAAGTCCAAGCTGCGCTACCACATCAGGAAGCATACAGGAGAGAATTTGGAGACCTGCCACGTGTGCTCGAAGCTCTTCACGAGCGTGTACTCGTTGCGAGAGCACATGAAGACCCACGAGAAGGGACCCGAGTCCAAGTGCCCTATTTGTGGCCGCAAGTTCTCGTCGGAGCGCTACTTCGTGCGGCACGTGCGCACGGCGCACGGCGGCGAAGCGGACACGCTCGAGTGCCCGCTGTGCGAGCGCACCTCCGCCAGCGTGGTGGGGCTGCGCGCGCACGTCATGACGCACAGCAAGGTCAAGCACATACAGTGTCGCATGTGCCCCAAGTCTGTTTCCTGCCGTAAGACTATGATGAAGCATCTCCTAAAAAAGCACGGCATCAAGGGTAGTGCTGAGTCACTCAAGTCTCTCTTCAACGAGCTGGACCCGCGCCAGTGTGAGCTCGGCTTGGACGAGGAACGACTCACCAGCATCTACGGCCCGCCGAAAAACAAAATCAATGATGTGCAGATCTCCGACTATTTTACATTCCCCAAAAACATACCCATTGGGAACCAGGACAGCAACGATGCCGAAGACAACGCTGCAGGCAACGACGACAGAACCGCGGACGGTGAAGACAATTCTGACGATAACGATGAAGAGGAGCTGGAAGAAGAGCCCGTTTCAGAGGACCTCTTGATGGCCAAGAAGAGAAGGAAGAAGATAAGGGTACGAGTAACTTACGAGTACGAAGATGCCGTACCCGATAAGATAAAGAAACACAAGAAAAAGAAAAAGAGGAAGAAGTCAAAGCGAAAAGAAATGGAGAGGAAAGAAAGGAAGGGAGGGCCTGTAAGTGCAGAGGCACAGGTGGGAAACGCTAATAATACTGTTAGTGAAGCGGGAAAGCGGACTAGTACGAGAAAAGAAGAACACGACACAGACCCTACAGCCTTTCTGGCAGTCAAACTGGAGCCTGAAGACTATGATGGAAATGAAGAAAACTGA
- Protein Sequence
- MSSDSDEPLSALKEKGPAPSTSQEPEGKVKKSHKRKKKKVKKLKLALRAASHGRNVRYYASQSEVERPQDVWLYMKDLNPTGPYSCLLCTEWFINKMKLVVHYVLNHKKDYCGICRYFVENRETWVLHSEFHTPVTCSQCPEQFPSDSELRVHFAREHLSVHCRFCCFMMPVDQYNHHLFQKHAITNVVNKDEPILWDTEYDGKELAEFDDLWLCQFCDMEFDCRENSRKHLSEHWSELRIDNCFSPHLGYKCRYCPTLFWNETDREGHQNRVHMAKHKEDFYRCVECSKMFSDKIWFVYHCLREHPKAPQPNVYMMKCAVCCSVFPSVDGIKEHFASEHPEAKKIFCSLGSCKLRPFSQNKSFRMHLQTFHGRAARPQEGASCIVCAREFPSARACSAHTALAHGPGRFKCKLCGDTLQSSDERKLHFMLQHPGQNPYECNLCGKTFQNKSSLYLHRSQHVNPERQSFTCKYCGKHFLKKDSFREHVLIHEGPRHTCSYCPMTFVQRSNMLRHERRHTGERPYTCLHCGRAFSDKGACNSHMRIHTPHEVHPCPYCGRTFAQKSKLRYHIRKHTGENLETCHVCSKLFTSVYSLREHMKTHEKGPESKCPICGRKFSSERYFVRHVRTAHGGEADTLECPLCERTSASVVGLRAHVMTHSKVKHIQCRMCPKSVSCRKTMMKHLLKKHGIKGSAESLKSLFNELDPRQCELGLDEERLTSIYGPPKNKINDVQISDYFTFPKNIPIGNQDSNDAEDNAAGNDDRTADGEDNSDDNDEEELEEEPVSEDLLMAKKRRKKIRVRVTYEYEDAVPDKIKKHKKKKKRKKSKRKEMERKERKGGPVSAEAQVGNANNTVSEAGKRTSTRKEEHDTDPTAFLAVKLEPEDYDGNEEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -