Imas033700.1
Basic Information
- Insect
- Incurvaria masculella
- Gene Symbol
- -
- Assembly
- GCA_946894085.1
- Location
- CAMPPJ020000412.1:265567-274072[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.033 2.7 9.5 1.7 1 23 288 310 288 310 0.98 2 12 6.5 5.3e+02 2.3 0.0 1 21 317 337 317 340 0.88 3 12 0.024 2 10.0 3.8 1 23 371 394 371 394 0.96 4 12 0.13 11 7.6 0.5 1 23 398 421 398 421 0.93 5 12 0.00079 0.065 14.6 0.2 2 21 443 462 442 467 0.91 6 12 0.011 0.92 11.0 0.0 2 23 474 495 473 495 0.97 7 12 0.011 0.9 11.0 0.1 2 23 503 525 502 525 0.94 8 12 1.8e-05 0.0014 19.8 2.7 1 23 535 557 535 557 0.98 9 12 7.6e-05 0.0062 17.8 0.3 1 23 563 585 563 585 0.98 10 12 5.2e-05 0.0042 18.4 1.3 1 19 591 609 591 613 0.96 11 12 7.4e-05 0.006 17.9 1.9 1 23 622 644 622 644 0.98 12 12 0.001 0.084 14.3 0.5 3 23 652 673 651 673 0.95
Sequence Information
- Coding Sequence
- ATGGCGTGCGAGGTGGCGGCTTGCCGCGCTTGCCTCGCCACCGACAGGCGGCTGCTGAGTCTGCAGGATTCTCTGCAGCACTGCTACCGCACACTCACCGGCGAGCAGCCGCATGCGTCGGATGGGCTGCCACAGCAGCTGTGCTTCGAGTGTGCGGCACGCGTGAGACGCTGCGGAGAGTTCCGTGAGCGGTGTCTGCGCGCACGCGACGCGCTGTGCACTCTGCTCCACGCGGGTCGCCCGTTAACGGCAGAGAGTCTCCGCTTGGTGGACCGTGGCGGCGCCGCGCTGCTCTCCCCGCTGCAGCTCAGTCCGCAGGCCCACGCACTGTCCTGCCACCACGACCAGCTTCAAGCGACACTCAGCTATCAGAGCAATGATAAAAAGAAAGTCACTGACGTGCACATCAAGGATGATGAGATTTACATTCCGAGTCCCGAAACCTCAATCAAAGATGACACTGAGGGCAAGAGCGACTATATCGAGGTGTTAATTCACTGTGAAAAGGTTAAAATCGACCATGATGAGGTTAAAATTGACTGTGACAAGGTTAAAATTGACCGTGATGAAGTGAAAGGTGGTAATGAAGTGAAAAGCGGCAATAAGGAGATCCTCCCGAAAGACCTTGAACAAGACACCACGACCGAAAAGACAGAGCAATTGAAAGATGAAACACCCGAATTAGTGAAACCCAAAAAGCGTAAATATTGTGAGAAGAAGAAAGTGGAGTCAAAGAAGAAGAAAGTTCAGGAAAAGAAGAAATTTTATGAAGAGTACGCCGTGGAAATCACATTGTCACACGAAGAACAAATGGAGGAGCTTCGCAAGCGACAGACCTCATTAAACTACACCAACTCGCCTTACACATGTGATAAGTGTTACAAGGGATTTTTGGACAAAATTACCTACGACAACCACATGCAGCGACACGACCCGAGCAGCGGCAGGTACGCGTGTGCGGTGTGCGCGACGCGCTTGCGGACGGCGGTCAAGATGCGTTGGCACGTGGTGGCGGCGCATGCGCGCAAGTACGCGTGCCGCGCGTGCGCGCACATCTCCAACACGAAAAGCCAGGCGCGACAGCACGAGGACTGGCACAAAGGAGTCACTCACCAGTGTAAATTGTGTGGCGAGACTCTCCGGAAAAGGACTACATACTTTTCGCACGTCCGCCTGCGTCACCCCGCGGAGTTCATGTGCGGCGCGTGCGGGGTCTCCTTCGGGAGCAAGCGCGGGCTCGACTCCCACGAGAAGCACACGCACAAGCAGATGCCGAATGCAAGCAATATTACGAACGGTCGGCAGGACGGTGAGGGCAGGTCGCTGTACTGCTCGGAGTGTGACATCCAGTTTTCTACGCAGGAGGCGTGGAAGCGGCACATCGTCACGTCGGCCAAGCACTGCGCTAGCAGAGGCTCTAGGTGCCGCATATGCGGTGAGATGTTGGACTCGAAGGAAGCTCTGGTGGCGCACGGGTTGACACACATGAAGAAAAGCGGCATTGTCCAGTGCGAGAAGTGCGAGGCGACATTTCCGTCGGCGCGCGAGTTCCTCACGCACGTGAAGGGCGCGCACCTCAGCACCGCCGCGCCGGTCCGGAGCTTCGTGTGCGAAGTCTGCGGCAGGACGTGCACTTCACACGCAATGCTAGTGCAACACCAGCGCACGCACACGGGTGAGAAGCCGTTCCCGTGCTCCGAGTGTCCCAAGCGCTACGGCAACCGGCTTCAGCTGCAGGTTCACGAGCGCACGCACACCGGCGAGCGGCCCTACCAGTGCGATATCTGTCACAAGGGCTTCCGTCGAAAGGCGACGCTCAAACTGCACTCGTGGGTCCATGCAGGAAGTCAAGTAAAGAAACCTTATACATGCAACATCTGTAACAGGGGATTTACGGGTTTCAGCAACATGAATCGACACAAGAAGCTGCACACGGGCAGCACGCTGGTTGCGTGCGAATTGTGTGAGAAGGAGTTCAGGAGCGCGGCGTCGCTCCGGCTGCACGTGAAGCACGTCCACTTGAAGGAGCCGTACCCGCCGCGCCGGCGCCGCGCGCCTCGCCCCCCCCGCCCTCTCGCCCCCCCGGCCCCGCCCGCACACCCCACCACCGGCGGCCGAGCGTCGTGA
- Protein Sequence
- MACEVAACRACLATDRRLLSLQDSLQHCYRTLTGEQPHASDGLPQQLCFECAARVRRCGEFRERCLRARDALCTLLHAGRPLTAESLRLVDRGGAALLSPLQLSPQAHALSCHHDQLQATLSYQSNDKKKVTDVHIKDDEIYIPSPETSIKDDTEGKSDYIEVLIHCEKVKIDHDEVKIDCDKVKIDRDEVKGGNEVKSGNKEILPKDLEQDTTTEKTEQLKDETPELVKPKKRKYCEKKKVESKKKKVQEKKKFYEEYAVEITLSHEEQMEELRKRQTSLNYTNSPYTCDKCYKGFLDKITYDNHMQRHDPSSGRYACAVCATRLRTAVKMRWHVVAAHARKYACRACAHISNTKSQARQHEDWHKGVTHQCKLCGETLRKRTTYFSHVRLRHPAEFMCGACGVSFGSKRGLDSHEKHTHKQMPNASNITNGRQDGEGRSLYCSECDIQFSTQEAWKRHIVTSAKHCASRGSRCRICGEMLDSKEALVAHGLTHMKKSGIVQCEKCEATFPSAREFLTHVKGAHLSTAAPVRSFVCEVCGRTCTSHAMLVQHQRTHTGEKPFPCSECPKRYGNRLQLQVHERTHTGERPYQCDICHKGFRRKATLKLHSWVHAGSQVKKPYTCNICNRGFTGFSNMNRHKKLHTGSTLVACELCEKEFRSAASLRLHVKHVHLKEPYPPRRRRAPRPPRPLAPPAPPAHPTTGGRAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -