Imas009686.1
Basic Information
- Insect
- Incurvaria masculella
- Gene Symbol
- -
- Assembly
- GCA_946894085.1
- Location
- CAMPPJ020000078.1:1529165-1554344[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.2e-05 0.0018 19.5 2.6 1 23 100 122 100 122 0.99 2 11 0.013 1.1 10.8 1.8 1 23 129 152 129 152 0.96 3 11 5.3e-05 0.0043 18.3 2.2 1 23 183 206 183 206 0.98 4 11 0.02 1.7 10.2 0.4 1 23 210 233 210 233 0.92 5 11 7.5 6.1e+02 2.1 0.4 2 21 258 277 258 282 0.89 6 11 1.9e-05 0.0015 19.8 0.4 3 23 292 313 292 313 0.98 7 11 1.9 1.6e+02 4.0 0.3 2 23 334 356 333 356 0.94 8 11 0.0048 0.39 12.2 3.8 3 23 369 389 368 389 0.97 9 11 1.7e-06 0.00014 23.0 0.3 1 23 395 417 395 417 0.98 10 11 7.7e-05 0.0063 17.8 0.4 1 23 423 445 423 445 0.98 11 11 1.9e-06 0.00016 22.9 0.1 1 23 451 474 451 474 0.98
Sequence Information
- Coding Sequence
- ATGCAGGACGTGAGCGTGTGCGCGGCGTGCCTTGCCACGGACGTTCGCATGCACAGCATGAGCGGTGCTGATCTGCTGCAGGCGTACCAAGTGCTCGCCGGCCGACCGATTATAAATGGAATGCCTGTTAATCTGTGCTGGGAGTGCGCGGCACTCACCAATAAGTTCAACATATTCCGGGTCAAGTGTGAACGAGCCTATCAACTCCTGCAAGATATCTTCAGCACACAAAATGAGGAGCAGCAGATGCAGGAGATAATGCGGCGGCGCGACACGGCGAGCTACCGCGAGGCGGCGTTCAAGTGCACTCTCTGCTACAAGGGCTTCGTCAACCGCAACGCGTACACCAACCACATGAGGAAACACGATCCGGCGACAGGCGAGTACCAATGTGATATGTGTAAGAGTAGATTCAAGAAGCGGTACTACGTCGCCGACCACATCTACAAAGTGCATATGACTAAATATGTCTGTAAATTCTGTCCGTTCGTCAGTCAGTGTGTCTACCAAGCGAGCACACATTACAAATGGCACAAAGGTGTGATCTACACATGCAGCATTTGTAGGGAGGAGTTCACCACGAAATCGACGTACCTGAGTCATCGGCGCATCAAGCACGCGACGGAGCATGTGTGCGGCTCGTGCGGGGAGTCCTTCGTCAGTCGACTCGGCCTGCTGCAACACAACAGCCGCTTGCACAAGAAGCCCCGCGCGACGCTAACGTCCCGTCTCCGCCGGCAGGGGGCGCCGGCACCGGACGGCAGCGGGCCGCAGTGCGCCGCGTGCGACGTGCGCTTCTCCTGCCGCGCCGCGTGGACGCGCCACCTGCTCATATCGCCGCGGCACGCCGGCGACGCGCACGTCCGCAACGGCTGCCGCGACTGCGGCGAGAGCTTCGCGACGGAGAAGGAGCTGCGCGCCCACCGGCGCTCGCTGCACCGGCGGCAGAAGGTGCGCGAGGTGGCGCGCGGCGCGGCGCCCGCTGGCGGCTACCCCGTGAAATGCTCGCAGTGTCCTGAGGTAATGGAGAGCGCCCGCCGCTACTGGCAACACTTCCGGCGGGAGCACCCCGCCGACCAGTACCCCTCCAACAACCCGGCCATCTGCGAGTACTGTGGCAAGGGATTCAAGTGCAAGTCGGTGCTCGCGCACCACCGCAACACGCACACGGGCAAGCGCGGCTACGTGTGCACGCTCTGCCCGAAGGCGTTCTTCACGCCGCAGAACCTCGAGAACCACCTCAAGTCGCACTCGGACGCGCGGCCCTACGTGTGCGACGTCTGCCGCAAGGGGTTCAAGTTCAGCGTAGCGCTGCTCAGGCACAGTCGGATCCACACTGGCGAGAAGCCGTACGTGTGCGATGTGTGCGGCAAGGCGTTCACCGACTCTAGCGGGCGCAAGGTGCACGTGCGGACCGTCCACCTCAAGGAACCCACCCCATACGTGAGCAAGGCCCGCTTGGAGAGAAGAAGGCAGGCTGAAGCTGTCAAAGGCATTCAAGAGCAGAATTAG
- Protein Sequence
- MQDVSVCAACLATDVRMHSMSGADLLQAYQVLAGRPIINGMPVNLCWECAALTNKFNIFRVKCERAYQLLQDIFSTQNEEQQMQEIMRRRDTASYREAAFKCTLCYKGFVNRNAYTNHMRKHDPATGEYQCDMCKSRFKKRYYVADHIYKVHMTKYVCKFCPFVSQCVYQASTHYKWHKGVIYTCSICREEFTTKSTYLSHRRIKHATEHVCGSCGESFVSRLGLLQHNSRLHKKPRATLTSRLRRQGAPAPDGSGPQCAACDVRFSCRAAWTRHLLISPRHAGDAHVRNGCRDCGESFATEKELRAHRRSLHRRQKVREVARGAAPAGGYPVKCSQCPEVMESARRYWQHFRREHPADQYPSNNPAICEYCGKGFKCKSVLAHHRNTHTGKRGYVCTLCPKAFFTPQNLENHLKSHSDARPYVCDVCRKGFKFSVALLRHSRIHTGEKPYVCDVCGKAFTDSSGRKVHVRTVHLKEPTPYVSKARLERRRQAEAVKGIQEQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -