Imas018810.1
Basic Information
- Insect
- Incurvaria masculella
- Gene Symbol
- -
- Assembly
- GCA_946894085.1
- Location
- CAMPPJ020000184.1:1253227-1263608[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.1 90 4.7 1.2 1 23 33 56 33 56 0.94 2 11 8e-05 0.0065 17.8 0.4 1 23 63 85 63 85 0.98 3 11 2.6 2.1e+02 3.6 1.1 1 23 89 112 89 112 0.96 4 11 5.6e-05 0.0046 18.2 1.1 1 23 118 141 118 141 0.95 5 11 1.6e-05 0.0013 19.9 0.5 2 23 146 167 145 167 0.96 6 11 3.2e-05 0.0026 19.0 0.3 2 23 174 195 174 195 0.97 7 11 2.7 2.2e+02 3.5 0.9 3 21 205 223 204 224 0.84 8 11 0.00018 0.015 16.6 4.1 3 23 238 259 238 259 0.97 9 11 2.2e-06 0.00018 22.7 0.5 1 23 265 288 265 288 0.98 10 11 5.1e-05 0.0041 18.4 0.4 2 23 298 319 297 319 0.97 11 11 0.0023 0.19 13.2 0.2 1 23 325 348 325 348 0.93
Sequence Information
- Coding Sequence
- ATGAACGCCCGATTCAAGATTTTGAAGATGTCGTCGGCGGACATGCTGAAAGGGAGGGAGGAGGATTCGAGGAAGTCCTACTACGTGAAAGCGACGTACAAGTGCAAGAGCTGCCTGTACGGTTACTACCGCGAGAAACGCTATCTGGACCACATGGCCGAAATGCACTCGGAGAATTCGGGCTCGCACCAGTGCACCATCTGCGAGTCGCAGTTCGCGCGCGCTGCCCTGCTGCAGGCGCACGTCCGCAGGCACTACCGGCGCTACCGCTGCCGCGCGTGCGGCCTCCAGAGCCGCAACATCAAGCGGATGCTGCGCCACTACGAGACGCAGCACGAGATCGACAAGGACTTCCCGTGCCCGGACTGCGACCAGGTCTTCCCGAGATACTACGCATTGAGATATCACAAAGAGAGCTGCCACCAGGAGAGCACAGAGTGCGAGTACTGCGGGAAGGTGCTCAGCAGCCGCACCAACTACAGGAGGCATGTCATGCTTCACACGGGCATGCCGTCACGCGAGTGCCCCGTCTGCAAGAAGGTGTTCCGCGGCGACGAGCTGTTCAAGTCGCACATGCGCGTGCACCGCACCACGCCCGCGCCCGACGCCTACTGCGCCGAGTGCGACGTGCACTTTAAGCACGTCTACATCTACAAGTCGCACCTCAAGAACAGTCGCAAGCACATCACGCCCGAGAGGCTCAAGTGGGGTTGCTCGATGTGCGACAAGCGCTTCCGTCAGCAGAACCACCTCACGTCCCACTTCAACTCCGTTCACCTCAAGAAGACCAACTTTGTCTGCCCGCACTGCGAGAAGAACATAAGCACCAAGAGCGCCCTGCGCGCGCACGTGCGCACCGTGCACGAGCGGGTGCCCGTCAAGAAGGACAAAGTGTGCGACATCTGTGCCAGGACATTCGCCACCAAATCCATCCTCCAGAACCACATCCGCACGCATACGGGCGAACGGCCTTTCATCTGCGCCGTCTGCAACGCGAGCTTCGGCCACTCCTCGGCGCTGTGGACCCACAACAAGCTCGTACACCTCAAACTAAAGCGGGGCGAGCGCGCGCCGCCGGCCCCGCTCTCCGTCGACAGTTCCGAAGCCCCGAACAACCCAGCGCACCGTAACGGACCGGAACCCCACGGTGACCTTGACTACCGAAAAGGCTCCGAATACCGTGTCAAATCCGAGGACACCGCAGGCTTCAATGCACCAGTGATGATAAAGTCTGGACCCCGGGATATCTCGGTTGCGCCAGCCGCAGACGCCGGAGCCGTCATGGCATACCCTTCTGGGATGCCTCAAGTCGGTGACACGAATGTGTCGGCTGGCCTTCCTGCCCGATACGAAATAAGCATTACATTCTAA
- Protein Sequence
- MNARFKILKMSSADMLKGREEDSRKSYYVKATYKCKSCLYGYYREKRYLDHMAEMHSENSGSHQCTICESQFARAALLQAHVRRHYRRYRCRACGLQSRNIKRMLRHYETQHEIDKDFPCPDCDQVFPRYYALRYHKESCHQESTECEYCGKVLSSRTNYRRHVMLHTGMPSRECPVCKKVFRGDELFKSHMRVHRTTPAPDAYCAECDVHFKHVYIYKSHLKNSRKHITPERLKWGCSMCDKRFRQQNHLTSHFNSVHLKKTNFVCPHCEKNISTKSALRAHVRTVHERVPVKKDKVCDICARTFATKSILQNHIRTHTGERPFICAVCNASFGHSSALWTHNKLVHLKLKRGERAPPAPLSVDSSEAPNNPAHRNGPEPHGDLDYRKGSEYRVKSEDTAGFNAPVMIKSGPRDISVAPAADAGAVMAYPSGMPQVGDTNVSAGLPARYEISITF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -