Imas033689.1
Basic Information
- Insect
- Incurvaria masculella
- Gene Symbol
- -
- Assembly
- GCA_946894085.1
- Location
- CAMPPJ020000412.1:82082-106899[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00093 0.075 14.4 0.5 1 23 321 343 321 343 0.97 2 12 0.001 0.081 14.3 0.7 2 23 351 372 350 372 0.94 3 12 0.069 5.6 8.5 1.6 1 23 376 398 376 398 0.98 4 12 0.0018 0.15 13.5 0.9 1 23 403 426 403 426 0.98 5 12 0.0021 0.17 13.3 0.5 1 23 430 453 430 453 0.93 6 12 0.0046 0.37 12.2 0.2 3 21 493 511 492 516 0.91 7 12 0.0014 0.11 13.9 0.5 3 23 526 547 526 547 0.98 8 12 0.14 11 7.6 0.3 2 23 567 589 566 589 0.96 9 12 3.5e-05 0.0029 18.9 0.4 1 23 600 622 600 622 0.98 10 12 1.1e-05 0.00088 20.5 2.8 1 23 628 650 628 650 0.99 11 12 0.00075 0.061 14.7 0.3 1 23 656 678 656 678 0.98 12 12 0.00014 0.011 17.0 0.4 1 23 684 707 684 707 0.98
Sequence Information
- Coding Sequence
- ATGTGGGACGTGCGCGCGTGCCGTGTGTGCCTCGCGACCGACGTGCACCTCAACCCGCTGCTCACGAACCGTCTGGAGCAGCACTACAGGGTTCTCACCGGTGAGAATGTGCGCGAGGCGGAGAGCCTGCCGCTGTACCTGTGCGGAGAGTGCTCGGCGCTCGTGCACAAGTACTACGGCTTCCGGCAGCGCTGCCTGCGCGGGCAGACGGCGCTCCGGGACCTGCTCCGCACACACGATGAGGTGACGCTGCATCAGATCCGGCTCGTGGACCGCGGCGCGGCCGGCCTGGCGTCGCCGTACGCCGCGCACCACACGCCCGCCGACTGCTTCGTGCAGCACTACCTCTACCACGACGCCGGATTCACCGAGGTACCACTTCCCCCCGCCCTCTCTCTCTCTCTCTCTCTCTCTTCCACTTTTATGTGCTCCAGAGTGGTGGAGGTGAAGGAGGAGGGGGCGGGGGACGAGCCGGAGCCGGAGCCGGAGCCGGAGCCGGGGCTGGCGGGCCGGCTCGACGGCGGCGTCAAGGAGGAGGATGCGAGCGAGGCCGACGACTACAAAGGCTATCTGTCCTCGACGATCGCGTTCACCAGCGACGAGGACGACGAGCCGCTCGCGCTGCGGCGCGCGCGCCTCTCCGCCGCGTCTACCCTGCCCCTGCCGCCGCCGGAGCCGCCCGCGCCCGCCTCGCCCGCGCCCGAGCCGCCCGCCAAGCGCCGGCGGCGGCGGAGGGTCGCCGTCGCCGAGGAGGCGGACGTCAAGCCGGCCCGCCGTCGCCGCTCGGTGGATGCTGGCGTTACAGAACGAGCCATCAAGAAGCGCGGCCCCAAGCCGGGCGGGCGCGGGCGCGACGAGTCCGCCATGGAGGAGTACGTGACGATCGTGCGCCTCTCGCCGGAGGAGCAGCTGCAGGAGATACTCGGCCGGCGCGACTCGGCCAACTATCTGAACGCGCCGTTCAAGTGCGAAGTCTGCTTCAAGGGCTTCGTGGACACGGACGCGTTCCGCAACCACGTGGTCAAGCACGAGCCGAGTGCCGGCGACATCGAGTGTCCGATTTGCAAATTCCGCTTCCAGACGCGTCGCACCCTTCAGAAGCACGCGGCCAACCACGAGAAGAAATATCAGTGCAAGTCGTGCCCCTACATCTCTAAGACAACGACGCAAGCCAAGCAGCATCAGAAGTGGCACAAGGGTATCACGTACAAGTGTCAGTACTGCGAAGAAGTCTCAACCAAGTGGACGTCGTACCTGTCGCACGTGCGAATCAAGCACCCTTCGGAGCACATCTGCAATGTGTGTGGCTACTCGTTCGTGAGCAAGCTCGGCCTCGCCATGCACAAGACCATGATGCACAAGGACACTCAGGAAAAGAAGGAAGAGATATTGGAGGCGGGCGGTGGGGGCGGAGTAGAGAGCAGTGGGGGTGGGGGTGGGGGCGGGGGTGGGGACGGGGACTCCGCCGCTCCATACTGCGCCGAGTGCGGGGTGCAGTTTACGTCGCGGCAGGCGTGGAAGCGGCACATGGTCACCTCGGCTAAGCACAGTCAGACCACCGACTTCGGGAACGGGTGCCGTGTGTGCGGCGAGACGTTCCCCGGCGCGGAGGAGCTGCGGCTGCACCACCGCAAGATGCACGCGCGCAAGCGCCCCAAGAACTACGGCAAGAAGCCTTCCGACATTATGTGGCCCATCAAGTGTGAGCATTGCGAGGAGGAGATCCCGAACGCGCGCGAGTACTGGACGCACTTCCGGCGCGCGCACCCCGACAAGAAGTACCCCATCAAGAAGGCGTTCGTCTGCGAGATCTGCGGCAAGGAGTTCCGGGGCAACGCGTTCCTCGTGTACCACAAGCGGACGCACTCGGAGGAGCGCACGTACACGTGCAAGCAGTGCCCCAAGTCCTTCTTCAACCGCACCAACCTGATGATGCACGAGAAGACGCACAGCGACCACCGGCCCTACCCGTGCGCCGTCTGCTTCAAGGCCTTCAAACTGAAGGGCGCTCTCGACAGACACTTCCGGAGTCACACGGGCGTCAAGCCGTACGAGTGCGAGTTCTGCGGCAAGGCGTTCGGCCAGTCCAACAGCCGCAAGCTGCACGTGCGCACGGTGCACCTCAAGCAGCCCGCGCCCTACGTCAGCCGCAGCCGGCTCGAGCGGCGGCGCCACGCCGACGCGGCCAAGGCGCACCCCACCTTCCCCTACTAG
- Protein Sequence
- MWDVRACRVCLATDVHLNPLLTNRLEQHYRVLTGENVREAESLPLYLCGECSALVHKYYGFRQRCLRGQTALRDLLRTHDEVTLHQIRLVDRGAAGLASPYAAHHTPADCFVQHYLYHDAGFTEVPLPPALSLSLSLSSTFMCSRVVEVKEEGAGDEPEPEPEPEPGLAGRLDGGVKEEDASEADDYKGYLSSTIAFTSDEDDEPLALRRARLSAASTLPLPPPEPPAPASPAPEPPAKRRRRRRVAVAEEADVKPARRRRSVDAGVTERAIKKRGPKPGGRGRDESAMEEYVTIVRLSPEEQLQEILGRRDSANYLNAPFKCEVCFKGFVDTDAFRNHVVKHEPSAGDIECPICKFRFQTRRTLQKHAANHEKKYQCKSCPYISKTTTQAKQHQKWHKGITYKCQYCEEVSTKWTSYLSHVRIKHPSEHICNVCGYSFVSKLGLAMHKTMMHKDTQEKKEEILEAGGGGGVESSGGGGGGGGGDGDSAAPYCAECGVQFTSRQAWKRHMVTSAKHSQTTDFGNGCRVCGETFPGAEELRLHHRKMHARKRPKNYGKKPSDIMWPIKCEHCEEEIPNAREYWTHFRRAHPDKKYPIKKAFVCEICGKEFRGNAFLVYHKRTHSEERTYTCKQCPKSFFNRTNLMMHEKTHSDHRPYPCAVCFKAFKLKGALDRHFRSHTGVKPYECEFCGKAFGQSNSRKLHVRTVHLKQPAPYVSRSRLERRRHADAAKAHPTFPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -