Imas024238.1
Basic Information
- Insect
- Incurvaria masculella
- Gene Symbol
- -
- Assembly
- GCA_946894085.1
- Location
- CAMPPJ020000253.1:9443-16291[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.7e-05 0.0014 19.9 0.2 3 23 154 174 153 174 0.98 2 13 0.032 2.6 9.6 1.4 3 23 181 204 179 204 0.93 3 13 0.0013 0.1 14.0 2.5 1 23 212 234 212 234 0.96 4 13 0.0091 0.74 11.3 2.6 1 23 244 267 244 267 0.95 5 13 0.00082 0.067 14.6 0.6 2 23 274 295 274 295 0.97 6 13 0.026 2.1 9.9 0.4 2 23 304 325 304 325 0.97 7 13 0.00078 0.064 14.7 0.5 2 23 332 353 331 353 0.96 8 13 0.00078 0.064 14.7 0.5 2 23 393 414 392 414 0.96 9 13 0.00052 0.042 15.2 0.1 2 23 433 454 432 454 0.97 10 13 0.00069 0.056 14.8 0.6 2 23 474 495 473 495 0.97 11 13 0.0011 0.091 14.2 0.5 2 23 502 523 501 523 0.96 12 13 0.00082 0.067 14.6 0.6 2 23 529 550 529 550 0.97 13 13 9.2e-05 0.0075 17.6 0.1 1 23 556 578 556 578 0.99
Sequence Information
- Coding Sequence
- ATGGGAGGGATGCAGCCAGCGAGCGGCCGCGAGGGGAGGGGGGAGCAGGCGGAGTGGTCCGAATCGGAGCTGACACTAGCCAAGGTGAAGTTGGAGTTAGAGTTAGACCTCGATCAGGAAGTTGATCATATGGAGCTCTTGGACCACTTGGTTAAAGAAGAAATTGTAGACACGAAAAAGATGAAACAAATATTGAAACATGAAAGAAAAGATTCAAGCAAAAAAAATAAGGGAAGCGATGGCAGCAGAGGGCGGGTGCGGGGAAGCATAGCGGTGAGCACCGGCAACATCGCCTCCTCGTTGCTCGAAGGAGTGTTCTCATGGAGCGGCGACCGCTGGAGAAAGGAAGTGGGTACGGCGGCGTTGGCGGCGGCGGCGGAGGCGCGGGTGGCGGAGGCCCGGGGAGGGCGGCGGCGGCGCGCGGGGCGCGGGCAGGGGCACGGGCAGGGCGAGCGGCTGTGCGAGCTGTGCGGCGCCGTGTTCGCGACGCAGAGCAAGCTCACGGTGCACAGGAGGTCGCACGCGGCCGCCACGCTGGCGTGCCCGGCGGCCGGCTGCAGCAAGCTGTGCAACTCGCGCTACAACCTGGCGCGGCACCACGCGCGCCGCCACGGAGCCGCGAGCGAGCGGCGGCACTCGTGCGCCGCGTGCGGCAAGCGCTTCGCCTTCCGCGCCGAGCTCACGCACCACGCCAAGCGACACGACCGCTCACGCTACCCGCGCAGGACTCACGCCTGCTCGCACTGCGCCAAGACTTACAAGACTCGCCAGTCTGTTGAAATCCACGAGCGCTCCGCACACACCGGGGAGCGGCCGGCGAGGTGCGACGAGTGTGGCGCAGCGTTCTTCCATGAGACGTACCTGCGGGAACACGTGCGCCTGCACACGGGAGATACCCCGGGAGCAGCGAGATGCGACGAGTGTGGCGCAGCGTTGTTCCACGAGACGTACCTGCGGGAACACGTGCGCCTGCACACAGGAGATACCCCGTGCGCGTGCCCCGTGTGCGCGCGCGTCTACGCGCAGCGTGCTTACATGAAGAACCACCTGCGCTCGCACCGTCTAGGCGACCTCGACGCCCGCACTCGCTCCCACATTACACCCAACTACCTGTCGTTCTTCCACGAGACGTACCTGCGGGAACACGTGCGCCTGCACACAGGAGATACCCCGTGCGCGTGCCCCGTGTGCGCGCGCGTCTACGCGCAGCGTGCTTACATGAAGAACCACCTGCGCTCGCACCGTCTAGGCGACCTCGACGCCCGCACTCGCTCCCACATTACACCCAACTACCTGTCGTGCCCCGTGTGCGCGCGCGGCTACGCGCAGCGTGCTAACATGAAGAGCCACCTGCGCTCGCACCGGCTCGCCGACCTCGACACCCGTACTCGCTCCTACATTACACCCAACTACCTGTCGAGGTGCGACGAGTGTGGCGCAGCGTTCTTCCACGAGACGTACCTGCGGGAACACGTGCGCCTGCACACAGGAGATACCCTGTGCGCGTGCCCCGTGTGCGCGCGCGTCTACGCGCAGCGTGCTTACATGAAGAGCCACCTGCGCTCGCACCGGGAGCGGCCGGCGAGGTGCGACGAGTGTGGCGCAGCGTTCTTCCACGAGACGTACCTGCGGGAACACGTGCGCCTGCACACAGGAGATACCCCGTACGTGTGCCCCGTGTGCGCGCGCGGTTACGCGCAGCGTGCTAACATGAAGAGCCACCTGCGCTCGCACCGTCTCGCCGACCTCGATGCGCACACTCACGCCCACATTCCACCCAACTATTTGAAATTATTAAAGAAATAG
- Protein Sequence
- MGGMQPASGREGRGEQAEWSESELTLAKVKLELELDLDQEVDHMELLDHLVKEEIVDTKKMKQILKHERKDSSKKNKGSDGSRGRVRGSIAVSTGNIASSLLEGVFSWSGDRWRKEVGTAALAAAAEARVAEARGGRRRRAGRGQGHGQGERLCELCGAVFATQSKLTVHRRSHAAATLACPAAGCSKLCNSRYNLARHHARRHGAASERRHSCAACGKRFAFRAELTHHAKRHDRSRYPRRTHACSHCAKTYKTRQSVEIHERSAHTGERPARCDECGAAFFHETYLREHVRLHTGDTPGAARCDECGAALFHETYLREHVRLHTGDTPCACPVCARVYAQRAYMKNHLRSHRLGDLDARTRSHITPNYLSFFHETYLREHVRLHTGDTPCACPVCARVYAQRAYMKNHLRSHRLGDLDARTRSHITPNYLSCPVCARGYAQRANMKSHLRSHRLADLDTRTRSYITPNYLSRCDECGAAFFHETYLREHVRLHTGDTLCACPVCARVYAQRAYMKSHLRSHRERPARCDECGAAFFHETYLREHVRLHTGDTPYVCPVCARGYAQRANMKSHLRSHRLADLDAHTHAHIPPNYLKLLKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -