Imas035512.1
Basic Information
- Insect
- Incurvaria masculella
- Gene Symbol
- -
- Assembly
- GCA_946894085.1
- Location
- CAMPPJ020000502.1:7543-17156[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00014 0.011 17.0 0.5 2 23 191 212 190 212 0.95 2 13 0.082 6.7 8.3 5.6 3 23 218 238 216 238 0.95 3 13 0.00017 0.014 16.7 2.5 1 23 270 293 270 293 0.98 4 13 0.00015 0.012 16.9 0.5 2 23 300 322 299 322 0.97 5 13 0.00068 0.055 14.8 0.2 2 23 329 350 329 350 0.97 6 13 0.00063 0.052 14.9 0.2 2 23 412 433 411 433 0.95 7 13 1.7e-05 0.0014 19.8 2.9 3 23 439 459 437 459 0.96 8 13 1 83 4.9 1.1 2 23 463 484 462 484 0.89 9 13 0.0038 0.31 12.5 0.2 1 23 491 514 491 514 0.98 10 13 6.4e-06 0.00052 21.2 0.8 2 23 521 543 521 543 0.97 11 13 0.001 0.083 14.3 0.9 3 23 551 571 550 571 0.97 12 13 0.00022 0.018 16.4 1.9 1 23 577 599 577 599 0.97 13 13 0.00093 0.076 14.4 6.0 1 23 605 627 605 628 0.96
Sequence Information
- Coding Sequence
- ATGAGCGCGATGTCCCTCTCGGCGGCGGAATCGGCGACCGGCTGCTGCGAGGGCTGCCTGACCCATGAGCGTCTGCGCAATCTTAGTGATGAGTGCTACGCGGACGGAGTATCGGAGCCCTACTTGGACATGTTCCTCAGCTGCTTCAACATGAAGATCGGTGAGAGAAGCGGCACAGCGGAGCAACACTTCGTGTGCGAGCGATGCGCGGATCGCTTGACCGAGGCGTGCCGCTTCCGTCGGCAGGTCATGAGAAGCCAGGAACTTCTGCGGCAGACGCTATACATCAAGCAAGAGCCCGAGGAGTTGGACGTGAAGGTTGACTACTCGTCGGACGAGCCGCTGCAGAGCAAGGTGCAGGTGAAGCTAGACATCGACTGTTCGCCGATGCGGGGTTGGAAGGGATGCAAGTTCCGCAGAGCAACGTCCATGATAGTACCTGTAGAACAGACCAAGCGATCCTACAAAACGTCTGTTGCTCAGGGTCTCCAGGCCAAGGGTAAGTTACCAAAGAGGGCGTACCACCCGCGCAACTTGCCAAAAGTAATTCCAATGGACGAAAAAACTCTCACGTGCAAACTGTGTACGCGGCCCTTTGATACCTTAAAATTGCTACGGAGACACATGGCCGGACATTTCCCGAGACACTTGTGTCACGCGTGCGGGGCCGTTTTCCTCCGCACGGAACACTTGAAGCGTCACACCAAGACGCACAATCACACGGAATGCCCGGAATGCGGCGAGCGCATGAAGGAAAGCTGCCTCCCCAAACACAACAGCCTGCATCATTCCGCGTCCAAGCCCATGCACCAGTGCACGGAGTGCGGGCAGAAGTTCAAAGACGTGACATTGAAAAAGGATCACATGAGGACCATTCACTCGTTGGATGTCGACGTGAGATGCCGGATCTGCGGAACGGTGTTCGCTTGGAAGCGCAGTCTAAAGACGCACATGCGGAGGGTGCACGAGCGGGAGGTGCGTGCGACGTGCGATCTGTGCGGGAGGCAATTCTTCGATGGCAGCGGGCTGGCGCAGCACATGCTGAAGCACACCGAGGACATGTCATCCGAATATTGGCTCAAGCAGGAGATATTCACCGAAGTCATTCCCAACTCGGTCCGCAGAGAGAAACCAAAGAGAAAGTACAAAAAGAGAAATAAAGACGACAAGAAAGCGAACAGCGAAAGAGTGAAGAAAGCAAAGGAGCCCCTCCCGATGGACATCAAGACCCTCACGTGCCAGCTGTGCGAGCGGGCCTTCGACACGATCAACCTCCTGCAGAGGCACATGGCGGAGCACTTCCCGGAGCACCTCTGCGACATCTGCGGGAACGTCTTCCGCAAGCCGGAGCACCTGAAGAACCACCTGAAGACGCACACCACCATCAAGTGCACGAAATGCAACAAGGTCATGAAGGAGATATCGCTCAAGAAGCACCTGGAGAACCGGCACACGAACAAGAAGAAAATCTACCGGTGCGGCGTGTGCGGGGAGAAGTTCCCCGGGAGCTCCGTCAAGAAGATGCACCTGAAGACGGCGCACGGTGTGAACATAGGCGGGGAGTGCAAGCTCTGCGCGAAGGTGTTCACATTCAAGTCCAACCTGAGGCTGCACATTCGCTCCGTCCACCAGAAGGAGGAGAACGCTTTCTGCCAGTTCTGCAGCAAGGGTTTCATTAACGACTACGCGCTGTCGCGGCACATGCTCAAGCACACGGGCGTGCGGAACCACGTCTGCCCCGTGTGCCACAAGGCGTACCTCAAGAAGGACACGCTGACCGCGCACATGAAGATACACAACACGGTGAAGGACTTCGTCTGTACGCTGTGCGCCAAGTCGTTCACGTACAAGTGCTCTCTGAAGGGGCACATGAAGAATCACCATCCGCACGTCAGCTTCGAGGGGTCAGGTTGA
- Protein Sequence
- MSAMSLSAAESATGCCEGCLTHERLRNLSDECYADGVSEPYLDMFLSCFNMKIGERSGTAEQHFVCERCADRLTEACRFRRQVMRSQELLRQTLYIKQEPEELDVKVDYSSDEPLQSKVQVKLDIDCSPMRGWKGCKFRRATSMIVPVEQTKRSYKTSVAQGLQAKGKLPKRAYHPRNLPKVIPMDEKTLTCKLCTRPFDTLKLLRRHMAGHFPRHLCHACGAVFLRTEHLKRHTKTHNHTECPECGERMKESCLPKHNSLHHSASKPMHQCTECGQKFKDVTLKKDHMRTIHSLDVDVRCRICGTVFAWKRSLKTHMRRVHEREVRATCDLCGRQFFDGSGLAQHMLKHTEDMSSEYWLKQEIFTEVIPNSVRREKPKRKYKKRNKDDKKANSERVKKAKEPLPMDIKTLTCQLCERAFDTINLLQRHMAEHFPEHLCDICGNVFRKPEHLKNHLKTHTTIKCTKCNKVMKEISLKKHLENRHTNKKKIYRCGVCGEKFPGSSVKKMHLKTAHGVNIGGECKLCAKVFTFKSNLRLHIRSVHQKEENAFCQFCSKGFINDYALSRHMLKHTGVRNHVCPVCHKAYLKKDTLTAHMKIHNTVKDFVCTLCAKSFTYKCSLKGHMKNHHPHVSFEGSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -