Imas018735.1
Basic Information
- Insect
- Incurvaria masculella
- Gene Symbol
- -
- Assembly
- GCA_946894085.1
- Location
- CAMPPJ020000184.1:30625-40328[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.072 5.9 8.5 0.9 1 23 244 267 244 267 0.95 2 12 0.27 22 6.6 0.6 1 20 274 293 274 296 0.95 3 12 6.9e-06 0.00056 21.1 1.9 1 23 346 368 346 368 0.98 4 12 9.5e-05 0.0078 17.5 2.7 2 23 373 394 372 394 0.95 5 12 0.00044 0.036 15.4 4.0 1 23 402 424 402 424 0.98 6 12 0.0097 0.79 11.2 0.1 1 23 430 453 430 453 0.95 7 12 0.0018 0.15 13.5 0.4 1 23 502 524 502 524 0.96 8 12 7.1e-06 0.00058 21.1 2.8 2 23 531 553 530 553 0.95 9 12 7.2e-05 0.0059 17.9 0.1 1 23 559 581 559 581 0.98 10 12 0.00017 0.014 16.8 0.7 1 23 587 609 587 609 0.98 11 12 5.5e-05 0.0045 18.3 1.7 1 23 615 637 615 637 0.98 12 12 0.00016 0.013 16.8 1.7 1 23 643 665 643 665 0.98
Sequence Information
- Coding Sequence
- ATGGCGGTTCTCGGACCATCGGTTATGGAGAATAAAATTGAAACGAAGCCGGAGCCAATAAACTGGTCGACGTTGTGCCACGTCTGCCTCAGTACAGATAGGAGGACGAGCGGCGTGGAGGGCGTGAGCTTCGCGTTCGGCCTCATGACGGAGTGGGCGCCGCAGGCGGGCGCGCGCGCTTGCTGGGAGTGCGGCGCGGCGCTGGCGCGCGTGCTGGCGCTGCGCGCGCGCGCGCTGCAGGCGCGCCGGCTGCTCGACGCCGCGCGCTCCGGCCGCGCCTCCGAGGAAACTCTGTACGGAAAATGCTCGTCCAATTTAAGCGTGCAGAGGTTAACGTCCTACCATGTGAAATCTACGTCTGGAGAAGACTTCGCTTCGTTCTTGAGCGACGGTGCGGCCTTACCCGATTTAAAAGAGGAACCCGACGGCGACGCTGGGAACGACTACGCGATGGAATGTGAGGTATGGGCTGAGGTGGCAATCCCTGGAGCAGATCCGGCACCCCCTGGCGAGAAAGTTTCTGCTCCGAAGGAGGAAATCGTCCAGACCGTTAAGAAAGCTAGGAAAGAGAAGAAGTCGAGAGTAAAGTCTGAACAGCCAGACGACAAAGTAAACAGTTGGGAGAAGAAGTTCATAAAAAAGATCGATGTGATAGAGGTGTTCCTCGCGACGGAAGAGGAACTATCGGAGTACAGGAAGAACGCGTTTAGTCAGATGAAAACGTCGAAGTACATGTGCATGACGTGTCTCGTTGGATACAAGTATGAGAGCAATCTCAAGGCACACAATCAGAAGTTTCATTCTGAGGAGGCCGGCGCGTACCAATGCGACATCTGCGCCAGCCGCCTGCCCACGCCGGCGTCGCTGCGGCAGCACCGCGACTGCCACTACCGGCTGTTCCGCTGCCGGCGCGCCGCCTGCGGCTTCGTGCACCCGCGCAGCCGCGTCGTGCGCGCGCACTACTCCCTGCACGAACTCCGCGAAAAGTCTCAAGCCAAGCGCCAGGTGGACGAGAGCTTCCGGCTGAAAGGCAGCTTCGAGTGCGACTACTGTGGCAAGGCGTTCAAGCAGCGTCGCCAGATTGCTGTTCACATGAAGCATCATTTTAAGCGCGTTATGTGCGAGGTCTGCGGCCACAAGTGCTCCACACTGTCCCAGCTGAGGAAGCACATGCTCGCGCACCTGGACCCGAGCTACCGTCCCTTCGAGTGCGAACAGTGCCACCAGAGATTCATCGACAGGCACAAGCTGCTCGTTCACACGAGGGTCCATACGGGAGAGCGGCCGTTCAAGTGCGAGGCGTGCGACGGGGAGTTCGTCAGCAAGGAGGCGCTGTCCAGGCACGGAAGGGACCGGCACAGCGGCGCAGTCAAGGTCACCAAGACCTTCTCGCAAGCGAGGACCAAGTCCTACTTCATCAACAGGCGATACTTCCCGGGGGAGGAGGAGAAGTTGTTGAGACTACGGAGGGACTACAAAATCGTCAAAGACGAGCAGAATCGCTACGAGTGCACGGTCTGCGAGAAGAAACTGTCCACGCTGGGGGCGCTGCGGACGCATTTCTACGTGCACTCCAACAAGAAGCCGCTGAAGTGCGACGAGTGCGACAAGACTTTCAAGTTCCACTCGCAGCTGCAGACGCACGTGCGGCTGCTGCACAAGGGCGAGAAGCCGTACCAGTGCAACGTCTGCGGCGCGCGGTTCGCCCTGAAGGCGACGCTCAACGTCCACCTGAGCTCGCACTCGAACGAGAAGCCGTTCAAGTGCGACCAGTGCAACGTGACGTTCAAGTACAAGGCGGGCCTCTGGTCGCACAAGTTGATACACACGGGCGAGAAGCCGCACCAGTGCACGATCTGCGGGTCGAGGTTCACGCTGAGGGGGAATCTCTCGGGTCACATGAAGACGCACACCAACGAGAGGCCGTTCGAGTGCAGCGTGTGCGGACGCAAGTTCCCGTGGAAACGGAACCTGAAGAATCATTTCAAGACGCACGCGAAGGAGCAACAGATGTTGCAGCTGCAATAG
- Protein Sequence
- MAVLGPSVMENKIETKPEPINWSTLCHVCLSTDRRTSGVEGVSFAFGLMTEWAPQAGARACWECGAALARVLALRARALQARRLLDAARSGRASEETLYGKCSSNLSVQRLTSYHVKSTSGEDFASFLSDGAALPDLKEEPDGDAGNDYAMECEVWAEVAIPGADPAPPGEKVSAPKEEIVQTVKKARKEKKSRVKSEQPDDKVNSWEKKFIKKIDVIEVFLATEEELSEYRKNAFSQMKTSKYMCMTCLVGYKYESNLKAHNQKFHSEEAGAYQCDICASRLPTPASLRQHRDCHYRLFRCRRAACGFVHPRSRVVRAHYSLHELREKSQAKRQVDESFRLKGSFECDYCGKAFKQRRQIAVHMKHHFKRVMCEVCGHKCSTLSQLRKHMLAHLDPSYRPFECEQCHQRFIDRHKLLVHTRVHTGERPFKCEACDGEFVSKEALSRHGRDRHSGAVKVTKTFSQARTKSYFINRRYFPGEEEKLLRLRRDYKIVKDEQNRYECTVCEKKLSTLGALRTHFYVHSNKKPLKCDECDKTFKFHSQLQTHVRLLHKGEKPYQCNVCGARFALKATLNVHLSSHSNEKPFKCDQCNVTFKYKAGLWSHKLIHTGEKPHQCTICGSRFTLRGNLSGHMKTHTNERPFECSVCGRKFPWKRNLKNHFKTHAKEQQMLQLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -