Imas006570.1
Basic Information
- Insect
- Incurvaria masculella
- Gene Symbol
- -
- Assembly
- GCA_946894085.1
- Location
- CAMPPJ020000053.1:1066406-1085302[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00089 0.072 14.5 0.2 1 21 283 303 283 307 0.92 2 12 0.00024 0.02 16.3 2.3 2 23 366 388 365 388 0.94 3 12 0.00012 0.0097 17.2 0.2 1 23 394 416 394 416 0.97 4 12 0.019 1.5 10.3 0.1 1 23 426 449 426 449 0.89 5 12 0.00064 0.052 14.9 2.7 1 23 454 476 454 476 0.95 6 12 3.4e-05 0.0028 18.9 0.8 1 23 482 504 482 504 0.95 7 12 0.00016 0.013 16.8 4.8 1 23 510 532 510 532 0.97 8 12 2.2e-07 1.8e-05 25.8 3.0 1 23 538 560 538 560 0.99 9 12 0.001 0.081 14.3 2.8 1 23 566 588 566 588 0.98 10 12 3.4e-05 0.0027 18.9 0.3 1 22 594 615 594 615 0.96 11 12 0.0053 0.43 12.0 0.8 3 21 624 642 624 644 0.96 12 12 6.2e-06 0.00051 21.3 0.2 1 21 650 670 650 671 0.94
Sequence Information
- Coding Sequence
- ATGGACGTGCGAGTATCGGATTCGGCGTTGTGCCGCCTTTGTGCAGCCGATAACCCACAGGGCTCCCCGATATTCCTAGTAGATGAAGATGGCGCTAATTTGAGCGAACTCATTAACTCCTATCTGCCCCTGAAGGTATATGATGATGGAAAATACTCACGGACGATTTGTCCTGGGTGCAACATACAACTTGAAGCGACAGTGGGATTTTTCAACTTAATAATAAATGGACAGCTGGTGCTGCGAGACCTACTGCAACAAGAGAAGAACAAGGAAACACAAGATGCACTCGAAAAGTCCACCATGGAAGATGTTGTTTACTCTGAAGAGCACCCGATTTCGCTACAAATGGCGGGCCTGGACAAGCCTAAGAGGAAAAGAGGAAGACCAAAGAAAGTCGTGAAGCCGGACGAGGAAGTTATGAGAAAAACTCCCGTAGCGGTTGAACAAGCTGCCGAAAAGGCAGAAGATGCCCCTACTGAATTGGTCGGCAAGCGCAGACGGAAAGCGCCCGAAAGGCTAAAAGAAACGGTGCAGGGTAAAGAGTTGGAGCGCATATTCCGCGAAGAGGGCGTGATAGACGGCGAAGAGAGCGATGGCGAGAAGACCGAAGATGTCTCCAAGATCGCCGTGGAGACTGAGCCAGTCCTGGACGAGGTGATCGGTCACATGCAAACTGCTGACGGCAAGCCTATTGGGGAGCCCATACGCATTAATAAGGGCAAGGGACGCGGGAGGCCCAAAGGTCCGACGCGGCCCAACAAGCAGACCTGCATCATTTGTGGTGCAGAGTTCTCTTGCCTCGGCCGGTACATGTCGCACGTGGCTCAGCACGGACCGGTCACATACCAGTGCTCTGAATGCGACGCCACCTTCGCCACGCGGCTCCAGTTCAATGAGCACCAGGAGGCCAGCGAGCACCGGGGCCAGAACATTATCAAAAGCGACTCGGATAAAGCGCAGGAAGAAAATGAATCACAGAACAATATAGAGGATACATTGGAATCACAGTCAGAAAAAGCTGGAACATCTGACAACAATCCGACGGAGGAAACGAGCACCAACCTCAGCCAACCGCAGCCATCTGGAAAGTTGAAGTGTCCACATTGTGATAAGATGTTCAGCACAAAGCAGAGCAAATCTATGCATATAAAGGCGCTGCACGCCGGGGAGCGCCCATACGCGTGCAAGACGTGTGGCGCGCGCTTCCCCTACCCGCGCTCCCTCACGCTCCACATGGTCTCGCACCGGAAGACGCTGGTCGGACACAAGGGCTACGCGTGCGACCTCTGCGGAAAGGTGTTGAACCACCCATCGTCCGTGGTGTACCACAAGGAGGCAGAGCACGCCGGGCAGAAGTTCGAGTGCATCAAGTGCGGCAAGCTATTCAAGCACCGGCAGCTGCTGCAGCGCCACCAGCTCGTGCACACGCAGTCCCGGCCCTACCTCTGCAAGCTCTGTCCGGCCTCATTCAAGACTAAGACGAACCTCATCAATCATCAATCCCTCCACACCGGTATCAAGAAGTTCCATTGCCTCATCTGCAAGCAGACATTCGCTCACAAGACCAGCCTTACTCTTCACATGAGATGGCATAGCGGGCAAAAACCATTCCAGTGCAGCGTGTGCAACAAGAGTTTCACACAGCGCGGCAATCTTATCGAGCATCACCGCACACACACGGGCGAGAAGCCGTACGCCTGCGACCAGTGCCCGCGCGCCTTCACCACATCCTCGCAGCACCGCCTGCACCGGCGGCGCCACGCGGGCGACAAGCCCTACGTCTGCACGCACTGCGGCAAGAGGTTCATGACGAGCGAGGCGTGGCGCGCGCACGTGCGCCGCGAGAACGGGCAGCTCGAGCACTGGTGCAGCGTGTGCGGCCGCGGGTTCGCCGAGCGCTGGGCGCTCATCAAGCACCAGCGCTGCCACACGGGCGAGAAGCCGCACGTCTGCCCGCACTGCCCGCGCGCCTTTGCCGACGCCTCTAACCTCGCCAAGCACAAGAAGGTATCGTCATAA
- Protein Sequence
- MDVRVSDSALCRLCAADNPQGSPIFLVDEDGANLSELINSYLPLKVYDDGKYSRTICPGCNIQLEATVGFFNLIINGQLVLRDLLQQEKNKETQDALEKSTMEDVVYSEEHPISLQMAGLDKPKRKRGRPKKVVKPDEEVMRKTPVAVEQAAEKAEDAPTELVGKRRRKAPERLKETVQGKELERIFREEGVIDGEESDGEKTEDVSKIAVETEPVLDEVIGHMQTADGKPIGEPIRINKGKGRGRPKGPTRPNKQTCIICGAEFSCLGRYMSHVAQHGPVTYQCSECDATFATRLQFNEHQEASEHRGQNIIKSDSDKAQEENESQNNIEDTLESQSEKAGTSDNNPTEETSTNLSQPQPSGKLKCPHCDKMFSTKQSKSMHIKALHAGERPYACKTCGARFPYPRSLTLHMVSHRKTLVGHKGYACDLCGKVLNHPSSVVYHKEAEHAGQKFECIKCGKLFKHRQLLQRHQLVHTQSRPYLCKLCPASFKTKTNLINHQSLHTGIKKFHCLICKQTFAHKTSLTLHMRWHSGQKPFQCSVCNKSFTQRGNLIEHHRTHTGEKPYACDQCPRAFTTSSQHRLHRRRHAGDKPYVCTHCGKRFMTSEAWRAHVRRENGQLEHWCSVCGRGFAERWALIKHQRCHTGEKPHVCPHCPRAFADASNLAKHKKVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -