Imas025626.1
Basic Information
- Insect
- Incurvaria masculella
- Gene Symbol
- -
- Assembly
- GCA_946894085.1
- Location
- CAMPPJ020000274.1:164023-178058[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0024 0.19 13.1 0.0 1 23 304 327 304 327 0.93 2 18 0.0017 0.14 13.6 0.1 3 23 353 374 351 374 0.93 3 18 2 1.6e+02 3.9 4.9 2 23 397 418 396 418 0.95 4 18 0.0026 0.21 13.0 0.8 1 23 422 444 422 444 0.97 5 18 9e-06 0.00074 20.7 1.0 1 20 449 468 449 472 0.94 6 18 0.081 6.6 8.3 0.2 2 23 479 501 478 501 0.93 7 18 0.14 11 7.6 3.4 1 23 508 531 508 531 0.97 8 18 0.28 23 6.6 4.7 1 23 537 559 537 559 0.96 9 18 8e-08 6.5e-06 27.2 0.6 1 23 565 587 565 587 0.99 10 18 0.00024 0.02 16.3 0.4 1 23 636 658 636 658 0.96 11 18 0.051 4.2 8.9 0.1 3 23 685 706 683 706 0.92 12 18 0.0092 0.75 11.3 0.9 2 23 728 749 727 749 0.96 13 18 0.27 22 6.7 0.0 1 23 753 775 753 775 0.94 14 18 0.00057 0.046 15.1 0.5 3 23 782 803 781 803 0.94 15 18 2.6 2.1e+02 3.6 1.0 2 23 810 832 809 832 0.88 16 18 0.00024 0.02 16.2 0.2 1 23 839 862 839 862 0.97 17 18 0.0008 0.066 14.6 0.3 3 23 870 890 868 890 0.97 18 18 0.0019 0.15 13.4 6.9 1 23 896 919 896 919 0.98
Sequence Information
- Coding Sequence
- ATGAGTAAACGAGCCCCCAGCGGCGCCGCCGGCACGCCCGGCGTGTGCCGTTGCTGCCTGGCGGTGGGCCGTTTCCGGCAGCTCGGCCGCACCTACAACTGGCTGGGATCCACGGAACACTACGCGACCATGCTTCGTACCTGCTTCAACATCGCCATTCCGCACTATGATGGAGTGGACGGTACGGGCAAGGCGCTGATTTGCGCGGTGTGCGTCACGCAGCTGCGCGACGCGTACAACTTCAAGAGGCAGGTGGAGCTCTCGCAGCGTCGCTTCTCGGACGTTTTGCAGGCTTGCGACGACCGGATCAACATTAACCGAATGCTGGCGGAGCAGAAGGGCGGTCTGGTCAAGCAGGAGTCTGCCGAGCGGAGCGGAACCGAGTCGGGGTACCTGTTCCTGAGCGAAGGAGAAGATCAGGCCGCGGATGAACCGGACAACGCCGAATTCCACTGTGTGGAGGACCAGGAGCCGATAAGCGAAGTCCGACCTGAAGGCGCTGCGCCCGAGGAAACCGGTGTCCATCCTACTTCCGACGAGTACGTAATAGCCATAGAAGTCGAAGAGGACTGCAAGACTGAACAAGCGGCGCACTTCGAGATCGACGTGGAGTCGGACGGCGAGCCCGCGGACGTGAAGCCCCCGGCGGCGGAGACCCGCGCCGGCGGTCCCGCGCCGAGCAGGGCGCCGGCGAGGAGGAAGCGGAGCGAGGACGCCGACTATAGTCCCAACAAGCGGAGAGTACCGAGGAAAACCGCGAAAGTCAAGACCAAGGAGAGTGGCTCTAGAGGGCCCAAAGCTGTAACCAAGCGGTCCGATAGATTAACCGAAGAGGATTGCTTGAAGCGTAACGCGTCCGCTATCATCGCCAACTCCCAGGTGTGCCCGTTCAAATGCCACCACAACGTGTACCGCTGCTTCTACTGTGACGTCGAGTACGAAGACCCCGCCGAGCTGCGCGCGCACACCGCGCTCGAGCACGCACTCGACAAATACAGCGCCCACCGATACGTCCAGAGCTACGCTGAAGTGTGCGtcgacatcaccgacatggcctgcagcctgtgcgaggagacattcgagcgtctggacgatctcatcgcgcacatctgcgacgcgcacgggaaaaagatcggtctaaagcacggtaccggcgtgatacccttcaaactcaccaaagacgccctgtcctgcttcgtgtgccagaagaggtgctacaccttccacatgctaagcatgcacgtgaacgaacacttcagcgcgtttgcgtgcaaaatttgcggctcgacgtacgcgacgcgcacacgtctcgacaggcacctctacacccacgacgcgggcgccttcgagtgtcccctctgcgggaaggtgttcaggacgcgcggcaagctgaaggcgcacgtgcagtgcgtccacgagaagatgaagaaactcgtgtgtcgcgtctgcgacacgcgcttcgcgaactacgagcagaaggtcaaccatcaggtgcgcgtgcacaaccgggagccgatgcggcacgagtgtcagttctgcgacaacgtgtacgcgctgcggcggctgctcatgaaccaccaccggcgggaccacctgcgggtccgcaaccaccgttgcgaagtctgcggcaagggtttcttcctcaagagtcagtgcgacaaccaccggctgacgcacacgcgcgagaagggcttccagtgtgatgtctgcgacaagaggtttaaccgcaagggcaacctagcaacgcacatggcgacccacacgGCTTTGCTCCGCAACCCGCCCGGGTCGACGTCCGCGCCCCAGCGGCAGCCCGTCGCCCCGGCGCAccgcatgaccgtcatcaacgcggcgcagctcatcgagcactcgcaggcggtgcccttcaagtgccgccagagcacctacctctgcttctactgcgcccaggagttcaccgacgcggagctcctcaaggcgcacacgagaacgcaccgcgtcacctccaacgacatcgtctactcgatcaagacgaagaacgacctcgtcaaagtggacataacctcgctcgactgcaagctgtgcgagaagaccataacggacatagcgacgctcaaacagcacctgatcgaggcgcacgacaagcgattcgccgacgacgtcgccgacgggctgctcccgttccggctgacggagagcctcagctgcgtcgtctgcgcgaagcgcttcccctacttccacgtgctcaacaagcacatgaacgtgcacttcaacctgttcatctgcgaggtctgcggcggcggcttcgcgacgcgcgcccgcatggcgtcgcacgcggaggtgcacgccacgatcgacgagccgtgccccgtctgcgggaaggtgttcaagctgcgccaccgtctgcggctgcacgtgcagctgatccacgagcggcgcggcaaccagacgtgcaactactgcccggcgcgcttcctcgactatcaccagaagctcaagcaccagctcgccgcgcacggcgaggcgccgcggcagttcccgtgcgacgcctgcggccgggtgctcgcgagccggcgcaacctcacgcggcacgtgaagcgcgaccacctgcgcgagcgcaacttcggctgtccgttctgcgagaagcgcttctacgacggctccacgctgaagaaccacctcgccgtgcactcgaaggagcggaacttcaagtgcgcgcactgcgGCCACTGCTATAGCACGAAGAAGGTGCTCAATGATCACATAAAGAGGCTGCATCAACCGAGGAAGGAAGCTGTGAAAAACTGA
- Protein Sequence
- MSKRAPSGAAGTPGVCRCCLAVGRFRQLGRTYNWLGSTEHYATMLRTCFNIAIPHYDGVDGTGKALICAVCVTQLRDAYNFKRQVELSQRRFSDVLQACDDRININRMLAEQKGGLVKQESAERSGTESGYLFLSEGEDQAADEPDNAEFHCVEDQEPISEVRPEGAAPEETGVHPTSDEYVIAIEVEEDCKTEQAAHFEIDVESDGEPADVKPPAAETRAGGPAPSRAPARRKRSEDADYSPNKRRVPRKTAKVKTKESGSRGPKAVTKRSDRLTEEDCLKRNASAIIANSQVCPFKCHHNVYRCFYCDVEYEDPAELRAHTALEHALDKYSAHRYVQSYAEVCVDITDMACSLCEETFERLDDLIAHICDAHGKKIGLKHGTGVIPFKLTKDALSCFVCQKRCYTFHMLSMHVNEHFSAFACKICGSTYATRTRLDRHLYTHDAGAFECPLCGKVFRTRGKLKAHVQCVHEKMKKLVCRVCDTRFANYEQKVNHQVRVHNREPMRHECQFCDNVYALRRLLMNHHRRDHLRVRNHRCEVCGKGFFLKSQCDNHRLTHTREKGFQCDVCDKRFNRKGNLATHMATHTALLRNPPGSTSAPQRQPVAPAHRMTVINAAQLIEHSQAVPFKCRQSTYLCFYCAQEFTDAELLKAHTRTHRVTSNDIVYSIKTKNDLVKVDITSLDCKLCEKTITDIATLKQHLIEAHDKRFADDVADGLLPFRLTESLSCVVCAKRFPYFHVLNKHMNVHFNLFICEVCGGGFATRARMASHAEVHATIDEPCPVCGKVFKLRHRLRLHVQLIHERRGNQTCNYCPARFLDYHQKLKHQLAAHGEAPRQFPCDACGRVLASRRNLTRHVKRDHLRERNFGCPFCEKRFYDGSTLKNHLAVHSKERNFKCAHCGHCYSTKKVLNDHIKRLHQPRKEAVKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -