Imas018767.1
Basic Information
- Insect
- Incurvaria masculella
- Gene Symbol
- ken
- Assembly
- GCA_946894085.1
- Location
- CAMPPJ020000184.1:518340-522847[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.08 6.5 8.3 3.0 5 23 24 42 21 42 0.96 2 13 2.3e-06 0.00019 22.6 4.5 1 23 68 90 68 90 0.98 3 13 6e-07 4.9e-05 24.4 1.6 1 23 96 118 96 118 0.97 4 13 0.019 1.5 10.3 5.4 1 23 124 147 124 147 0.94 5 13 0.0033 0.27 12.7 0.2 1 23 183 206 183 206 0.96 6 13 0.0023 0.19 13.2 3.6 1 23 212 234 212 234 0.98 7 13 0.00019 0.015 16.6 0.4 1 21 240 260 240 261 0.94 8 13 1.4e-06 0.00011 23.3 1.5 1 23 356 378 356 378 0.99 9 13 0.0001 0.0084 17.4 4.9 1 23 393 415 393 415 0.98 10 13 2.1e-05 0.0017 19.6 0.6 1 23 421 443 421 443 0.98 11 13 0.00011 0.009 17.3 0.9 1 23 449 471 449 471 0.96 12 13 5e-07 4e-05 24.7 0.3 2 23 478 499 477 499 0.97 13 13 0.00032 0.026 15.9 0.3 3 23 507 527 505 527 0.97
Sequence Information
- Coding Sequence
- ATGATCAGCTGTGCGTCCAAGCTCAAGGAGCACATGACTGTAcacacgggtgtcaagccattccagtgtcactgcggcaaacgcttccggttaaagtccatcttgaaagatcacctcgagacgcacatagtgggcggGGTCAAGAAGAAGCGCAAGAGAAAGAAAAGAGAAAAGAAAGAAGAAAGAGAAGATGGCGAAGGCTACATCTGCAATGAATGCGGGAAACATTTCAAAAGGCTTTACCTGctgaagcagcatttccggacgcactccgacgaccgtccgttcatttgcgacacgtgcgacaagagcttcaagacgaaagggcacctgatcgaccacatggactcgcacacggcgggccagccgttcatgtgctccaagtgcgggaacacgttcaagcGCGCCTCGTGCCTCAAGTGCCACGCGAGGAACGGGCACTGCAGCGCCGACCGCAGCGCGCGCCAGCCGCGCCCGTACCGCCCGCCGAGGAGGCGACCGCGAAGGCCCAAGGGCCCGACGGTCAAGCCGTTCGTCGTCAAGCCGTTCCCGTGCGGGCTCTGCAGCGCCTCGTACAGCAACGTCAAGAATCTGTACACGCACGTCCGCTACGTGCACAAGGGTATCAAGATGCACAAGTGTCAGTACTGCGAGAAGGACTTTCGCGACAAGTACCTGAAGGTGCaacacgagagggtgcacacgggggagcggccgttcgcctgcaagtcctgcggcagcagcttcAACACGAGCTCCTACTTGAACAAGCACGCCCGGGCCTGCCGGGGCCCGCGCGTGCGGCCGCCGCCGGCCTCGCCGGAGACGGTGCGAGCGGGTCCCGCGGAGGCGAGGCCAGAGCGAGTCGAGTTGGAGATCACGAAAATGGAGCAGGATGAAAAACCCACCAGCTCGTTTGAGCCGCCGCCGTTGGAACAAGTCACCTGCAAGTATTCCGACAGCGAACCGGACTACGAAGACAGAGCTATAGGAGAAGACAGTGCGACTGGCAACAGTGCCGTGGAAATCGAACTCACACCtcgcacgcatacgggcgagcgaccgtacacctgtccgacgtgcggcaagacattcggctaccgggccagtctcaactaccacaagcggacgcacatcgtggatggcgcgaacggagaacgcggcgacattgagaagttcaaatgcacgctatgcgataagtcgtactctcacaagaaaacactcgagatgcacaaaatcaagcacaccggcacgcgaccgtacgagtgcaaagagtgcgggaagagtttcgtgtggccgaacaacctgaagacccactcgaagagtcacgccgctgagaagccgtacgcgtgcggcaagtgcggaaagaggttcgccagaaaggacacgctccggttccacacggccacgcacagcgacgagagacctctggtgtgcgagctgtgcgggaagagtttcttccgggcgagcagtctcgcgacgcacattaagacgcacgcggcggtgcgaccgttcggctgcgaacgctgcgggaagcgcttcGCCCTGCCCAACGGCTTGAAGAAACACCTCGAGTCGCATCTTAAAGTGAAGAAGCGGAAGGCGCGCTCCGATGAGATGCTCAGCATCGCGAGCTTCTAA
- Protein Sequence
- MISCASKLKEHMTVHTGVKPFQCHCGKRFRLKSILKDHLETHIVGGVKKKRKRKKREKKEEREDGEGYICNECGKHFKRLYLLKQHFRTHSDDRPFICDTCDKSFKTKGHLIDHMDSHTAGQPFMCSKCGNTFKRASCLKCHARNGHCSADRSARQPRPYRPPRRRPRRPKGPTVKPFVVKPFPCGLCSASYSNVKNLYTHVRYVHKGIKMHKCQYCEKDFRDKYLKVQHERVHTGERPFACKSCGSSFNTSSYLNKHARACRGPRVRPPPASPETVRAGPAEARPERVELEITKMEQDEKPTSSFEPPPLEQVTCKYSDSEPDYEDRAIGEDSATGNSAVEIELTPRTHTGERPYTCPTCGKTFGYRASLNYHKRTHIVDGANGERGDIEKFKCTLCDKSYSHKKTLEMHKIKHTGTRPYECKECGKSFVWPNNLKTHSKSHAAEKPYACGKCGKRFARKDTLRFHTATHSDERPLVCELCGKSFFRASSLATHIKTHAAVRPFGCERCGKRFALPNGLKKHLESHLKVKKRKARSDEMLSIASF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -