Imas012204.1
Basic Information
- Insect
- Incurvaria masculella
- Gene Symbol
- -
- Assembly
- GCA_946894085.1
- Location
- CAMPPJ020000104.1:1036244-1046646[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.0059 0.48 11.9 0.6 1 23 67 89 67 89 0.94 2 26 0.0059 0.48 11.9 1.9 1 23 119 141 119 141 0.98 3 26 0.00016 0.013 16.8 0.4 1 23 149 171 149 171 0.97 4 26 6.4 5.2e+02 2.3 0.7 3 14 179 190 177 191 0.83 5 26 0.00016 0.013 16.8 0.4 1 23 199 221 199 221 0.97 6 26 6.4 5.2e+02 2.3 0.7 3 14 229 240 227 241 0.83 7 26 0.00016 0.013 16.8 0.4 1 23 249 271 249 271 0.97 8 26 6.4 5.2e+02 2.3 0.7 3 14 279 290 277 291 0.83 9 26 0.00016 0.013 16.8 0.4 1 23 299 321 299 321 0.97 10 26 6.4 5.2e+02 2.3 0.7 3 14 329 340 327 341 0.83 11 26 0.00016 0.013 16.8 0.4 1 23 349 371 349 371 0.97 12 26 0.00016 0.013 16.8 0.4 1 23 398 420 398 420 0.97 13 26 6.4 5.2e+02 2.3 0.7 3 14 428 439 426 440 0.83 14 26 0.00016 0.013 16.8 0.4 1 23 448 470 448 470 0.97 15 26 7.2 5.9e+02 2.2 0.6 3 13 478 488 476 490 0.83 16 26 0.00016 0.013 16.8 0.4 1 23 498 520 498 520 0.97 17 26 1.1 92 4.7 0.2 2 14 527 539 526 540 0.84 18 26 0.00073 0.059 14.7 0.3 1 23 548 570 548 570 0.97 19 26 7.2 5.9e+02 2.2 0.6 3 13 578 588 576 590 0.83 20 26 0.00016 0.013 16.8 0.4 1 23 598 620 598 620 0.97 21 26 0.00016 0.013 16.8 0.4 1 23 648 670 648 670 0.97 22 26 0.00025 0.021 16.2 0.2 3 23 678 698 676 698 0.95 23 26 0.28 23 6.6 2.1 1 23 704 726 704 726 0.98 24 26 7.8e-05 0.0064 17.8 3.0 1 23 732 754 732 754 0.98 25 26 0.12 9.5 7.8 0.4 2 23 764 785 763 785 0.94 26 26 3.5e-05 0.0029 18.9 2.3 1 23 800 823 800 823 0.97
Sequence Information
- Coding Sequence
- ATGGAGAAGCCTAGTGGCGTTGGAATTCAGGATCACTGGATGAAAAGCGTGATGGAACCTCAGTCTTACGGCGGCAAAGCAGACAACCCCGAGACGTCGGATGCTCTCTCGGTGAAGCGAGAACGTGAAAAGTCTTCAGACTGCTACAGCGAAGGAGTTCCGGTGGTGACGGTGGTGGCGGCCGCGCAGCCGGGCGGCTTCGCCTGCCAGATCTGCGACCAGAGCTTCGAGAGCATGGAGTACCTCATGCTGCACAACAAGTTTCACCAGGCGGCCAAGGAGCCACCGGTCACCGAGCCGCCGCCCCCAGACAACATAGTCTACATGATGCAGGGTGGAAAGAAGCGTCGCAAGTACAAGTGTGACCTTTGCGACGTAAAGGTCAACTCGCAGTACCACCTGGACATTCACCGCAGCAAACACGAGGGGCAGTCGGCGAAGAAGTTCGCGTGCACGGTCTGCGAGCGCACCTTCGTCGCGCCGCAGTTCCTCAAGTCGCACATGCAGACACACTCCGCCTCCAACACTATCTGTTGCGAGGTGTGCGGCGCCGCCTTCACTGGTAGCAAGCACGAGGGGCAGTCGGCGAAGAAGTTCGCGTGCACGGTCTGCGAGCGCACCTTCGTCGCGCCGCAGTTCCTCAAGTCGCACATGCAGACACACTCCGCCTCCAACATTATCTGTTGCGAGGTGTGCGGCGCCGCCTTCACTGGTAGCAAACACGAGGGGCAGTCGGCGAAGAAGTTCGCGTGCACGGTCTGCGAGCGCACCTTCGTCGCGCCGCAGTTCCTCAAGTCGCACATGCAGACACACTCAGCCTCCAACACTATCTGTTGCGAGGTGTGCGGCGCCGCCTTCACTGGTAGCAAGCACGAGGGGCAGTCGGCGAAGAAGTTCGCGTGCACGGTGTGCGAGCGCACCTTCGTCGCGCCGCAGTTCCTCAAGTCGCACATGCAGACACACTCAGCCTCCAACACTATCTGTTGCGAGGTGTGCGGCGCCGCCTTCACTGGTAGCAAACACGAGGGGCAGTCGGCGAAGAAGTTCGCGTGCACGGTCTGCGAGCGCACCTTCGTCGCGCCGCAGTTCCTCAAGTCGCACATGCAGACACACTCAGCCTCCAACACTATCTGTTGCGAGTACCACCTGGACATTCACCGCAGCAAACACGAGGGGCAGTCGGCGAAGAAGTTCGCGTGCACCGTCTGCGAGCGCACCTTCGTCGCGCCGCAGTTCCTCAAGTCGCACATGCAGACACACTCAGCCTCCAACACTATCTGTTGCGAGGTGTGCGGCGCCGCCTTCACTGGTAGCAAACACGAGGGGCAGTCGGCGAAGAAGTTCGCGTGCACGGTCTGCGAGCGCACCTTCGTCGCGCCGCAGTTCCTCAAGTCGCACATGCAGACACACTCAGCCTCCAACACTATCTGTTGCGAGGTGTGCGGCGCCGCCTTCACTGGTAGCAAGCAGGAGAGGCAGTCGGCGAAGAAGTTCGCGTGCACGGTGTGCGAGCGCACCTTCGTCGCGCCGCAGTTCCTCAAGTCGCACATGCAGACACACTCCGCCTCCAACACTATCTCCTGCGAGGTGTGCGGCACCGCCTTCACTGGTAGCAAGCATGAGGGGCAGTCGGCGAAGAAGTTCGCGTGCATGGTGTGCGAGCGCACCTTCGTCGCGCCGCAGTTCCTCAAGTCTCACATGCAGACCCACTCCGCCTCCAACACTATCTGCTGCGAGGTGTGCGGCGCCGCCTTCACTGGTAGCAAGCAAGAGGGGCAGTCGGCGAAGAAGTTCGCGTGCACGGTCTGCGAGCGCACCTTCGTCGCGCCGCAGTTCCTCAAGTCGCACATGCAGACACACTCCGCCTCCAACACTATCTGCTGCGAGGTGTGCGCCGCCGCCTTCACTGGTAGCAAGCACGAGGGGCAGTCGGCGAAGAAGTTCGCGTGCACGGTGTGCGAGCGCACCTTCGTCGCGCCGCAGTTCCTCAAGTCGCACATGCAGACCCACTCCGCCTCCAACACTATCTGCTGCGAGGTGTGCGGCGCCGCCTTCACTGGTCAGGCCTATCTGAAGTTGCATATGCAGCTGCATTCGGAAGTGAAGAAATTCAAGTGTGTCAAATGCGACGAGTGGTTCCCCACCAAGAACTGCGTCAAGATACACGCCAAGAAACATTCCAAGGTGAAGAACTTCAAGTGTGACTACTGCGGGAAGTGCTTCGTCTCGAAGATCACGATGGGCAAGCACCGAGCGACGCACGAGGCGCGCCCGGTGGACATGCACGTGCAGTGTCCGCAGTGCGACCGCACCATGCACGCGTCGCTGCTGCGCACGCACGTGGCGCGCGCGCACGTGCCCACACAAGCGGGCCGCGACGATGACGTGAAGCGGCCACACAAGTGTGAAACGTGCGGCAAGAACTTCATCGTGAAGATCAACCTGGAGCTGCACATCCGCGTGTGCCACCCGGACCTTGCGCCTGAGGAAGAGGAGGAGGACTCGGGGACCGACGAGTGA
- Protein Sequence
- MEKPSGVGIQDHWMKSVMEPQSYGGKADNPETSDALSVKREREKSSDCYSEGVPVVTVVAAAQPGGFACQICDQSFESMEYLMLHNKFHQAAKEPPVTEPPPPDNIVYMMQGGKKRRKYKCDLCDVKVNSQYHLDIHRSKHEGQSAKKFACTVCERTFVAPQFLKSHMQTHSASNTICCEVCGAAFTGSKHEGQSAKKFACTVCERTFVAPQFLKSHMQTHSASNIICCEVCGAAFTGSKHEGQSAKKFACTVCERTFVAPQFLKSHMQTHSASNTICCEVCGAAFTGSKHEGQSAKKFACTVCERTFVAPQFLKSHMQTHSASNTICCEVCGAAFTGSKHEGQSAKKFACTVCERTFVAPQFLKSHMQTHSASNTICCEYHLDIHRSKHEGQSAKKFACTVCERTFVAPQFLKSHMQTHSASNTICCEVCGAAFTGSKHEGQSAKKFACTVCERTFVAPQFLKSHMQTHSASNTICCEVCGAAFTGSKQERQSAKKFACTVCERTFVAPQFLKSHMQTHSASNTISCEVCGTAFTGSKHEGQSAKKFACMVCERTFVAPQFLKSHMQTHSASNTICCEVCGAAFTGSKQEGQSAKKFACTVCERTFVAPQFLKSHMQTHSASNTICCEVCAAAFTGSKHEGQSAKKFACTVCERTFVAPQFLKSHMQTHSASNTICCEVCGAAFTGQAYLKLHMQLHSEVKKFKCVKCDEWFPTKNCVKIHAKKHSKVKNFKCDYCGKCFVSKITMGKHRATHEARPVDMHVQCPQCDRTMHASLLRTHVARAHVPTQAGRDDDVKRPHKCETCGKNFIVKINLELHIRVCHPDLAPEEEEEDSGTDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -