Imas025607.1
Basic Information
- Insect
- Incurvaria masculella
- Gene Symbol
- Repin1
- Assembly
- GCA_946894085.1
- Location
- CAMPPJ020000274.1:2894-14008[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 1.1 93 4.7 0.7 10 23 3 17 1 17 0.92 2 22 0.06 4.9 8.7 1.1 3 23 26 47 24 47 0.94 3 22 0.00025 0.021 16.2 0.2 1 23 79 101 79 101 0.96 4 22 1.8 1.5e+02 4.1 3.8 1 16 107 122 107 133 0.85 5 22 0.015 1.2 10.6 0.1 1 16 165 180 165 182 0.85 6 22 0.0014 0.12 13.8 0.9 1 23 219 242 219 242 0.94 7 22 0.0011 0.086 14.2 1.8 1 23 312 334 312 334 0.99 8 22 0.0048 0.4 12.2 0.1 1 23 338 360 338 360 0.96 9 22 0.018 1.4 10.4 0.0 1 23 365 388 365 388 0.96 10 22 0.00078 0.064 14.6 3.3 1 23 394 417 394 417 0.97 11 22 0.0049 0.4 12.1 0.3 1 23 424 447 424 447 0.95 12 22 0.00025 0.02 16.2 2.0 1 23 453 475 453 475 0.97 13 22 3e-06 0.00024 22.2 0.3 1 23 481 503 481 503 0.99 14 22 0.00017 0.014 16.7 3.0 1 23 509 531 509 532 0.95 15 22 0.02 1.6 10.2 2.7 2 23 622 643 621 643 0.96 16 22 0.029 2.3 9.7 0.0 1 23 647 669 647 669 0.95 17 22 0.052 4.2 8.9 0.0 2 23 675 697 674 697 0.88 18 22 0.014 1.1 10.7 3.8 1 23 703 726 703 726 0.93 19 22 2e-05 0.0016 19.7 1.0 1 23 733 756 733 756 0.97 20 22 0.00016 0.013 16.8 1.5 1 23 762 784 762 784 0.97 21 22 4.8e-06 0.00039 21.6 2.0 1 23 790 812 790 812 0.97 22 22 4.3e-05 0.0035 18.6 3.8 1 23 818 840 818 841 0.95
Sequence Information
- Coding Sequence
- ATGGAGTTTGCGACCGAATCTAAGCTGAATCATCACATGTCGCGCGTGCACATCAACTCGGGTTACCGGCTGGCGTGCCCGCACTGCCCCGAGCGCTTCAAGGAGTACAGGCCGCGCGTGCACCACATGAAGGTCGTGCACAACGTGCAGAACCTCAACTGCACGTGTCTCGCGTGCAGGGGGCCCGCCCCCGCCGGGCTGCCCAAACAGCCGCCCGACGCCGGCGACAAACGCTTCGAATGCCCGCTATGTGGGAAGAAGTTCAAGGAGAGAAAAGTCTTAGTCGCGCACCGAGTCGTTCACACGGGGGAGAGTGACTTCAAGTGCAACGTGTGCTCGAAAGCTTTCGGACGTTTCAAGGAGTACCGCCCGCGCGTGCACCACATGAAGGTTGTGCACAACGTGCAGAACCTCAACTGCACGTGTCTCGCGTGCAGGGCGCCCGCCGCCGCCGACATCCCCAAACAGCCGCCCGAAGCGGGCGACAAGCGCTTCGAGTGTCCGCTgtgcgggaaaaagttcacagccaggaaaggactgGCCAGAAAGAAACGTCGGAAAGCTGAAAACTTAAGGGACAAAATGAGCAAGCGTAATGCCTGCATTCTTCTCGAATACTCGCACGTGAGTCCGTTCAAGTGGTTGAAGAACGGTTTCCTATGCTTCTTCTGCGACACGAAATATACCGATCCCAAAGCGCTTAGGGAGCACACTCGTGTAAATCATGCGGACGAGATAATCATGGATTTCGTGGGTAGGGTGAAGAAGCATGACTTGGTAAAGGTCGACGTCGCTAGAGTCGACTGCAGGCTCTGTCCAGAGCCCGTTCACTGCATCGATTCCCTAAAGCGACACCTTCTTGACTGCCACGACAAAAAGATCAAGGCAGACTACGGCGACGGCGTGATACCGTACAAGCTCGACACGAACGAGTTCCAATGCCACCTCTGTAAGATTCCGTTCAACGTGttcataactctcaataaccacatgaactcgcattacacgaactacatctgcgagacgtgcggcaagggcttcgcgaccggcaagcgtctcgcgtcgcacgcgctctcgcaccagacgggcgtgttcccctgcgccgcctgcggcgagtcgttcccctcgcgcgccgcccgcaccaaccacacgaaccgcgcgcacagggaggccatgaagttcaagtgtccgcagtgcggcgagtgcttcaagtcgtacctcgagcgcaacaagcaccggcgactcgtccacaacgtcacctcgctcgagtacaagtgcagcatgtgccccaaggtgttcccgctcgccggcaagcgcacgtaccacatcaagcaggtccacatgagggagcgcaaccactcgtgctcggtgtgcgagtggaagttcttctccaagacggagctgcaggaccacatgataaagcacggcggcgagcggatatacgagtgcgccgtgtgcaagaagtcgtacgcgcgcaagccgacactgcgcgagcacatgcggatacacagcgacgacaggcggttcgtgtgcccggtgtgcggcaaggcattcgtgcagaactgcagccggaagtatcacatgaaggcgcaccatcccgaagAGGTCGTTGATGatccggagctactgagagagcacaacgtgaccgagcacgagatgccacccgttaagaaatacgtcaaaaagatgaagaaatacgagatggtcaaagtcgacatcactaacgtcggctgcagattgtgcgatgacccaatccgcgacttcagcactcttaagcaacacctaagtcacgttcatagcaaaactatagaccccaagttcagtgacggagctctcccttttcgactatcactaggcacgctacattgcgaactgtgcgtcgagaagttcactgaattcaaaacgctcaaccagcacatgaacaagcacttccggaacttcatctgcgaggcgtgcggcgctgggttcgtgacgcccgagcgtctgcggacgcacgggctctcgcacgagagcggcgccgtgccctgcgccctgtgcgacaaggtgttccgctcggcgttcgctcgcaacgagcacgtcgccaacatccaccggcaggtgaagcggcaccgctgcccgcactgccgcgaggccttccgcaactacttccagaggaacaagcacatcaccgccgtgcacaacgtcaagtgcaaggagttcgcgtgctcgctctgcgggaaggtgttcacgctcagcgggaagctcacgcaccacgtgaagacggtgcacctcaagcagaagcggcacacctgctccgtgtgcaactggaaggtgtactccaagtcggaactcaaggagcacatgatccggcacggaggggagaggatacacgagtgtgcggtgtgcaagaagtcgtacgcgaggaagtacactctgcgggagcatatgcggatacatgacaacgacaggcggttcgtgtgcgcggtgtgcgggaaggcattcgtgcagaactgtagtttgaagcaccacgtgaaggttcatcatccggatgcggGCGGGATTGCACGTTCGGCGGCAGCCCGTGGGAGCGAAACTATCCGGTTATAG
- Protein Sequence
- MEFATESKLNHHMSRVHINSGYRLACPHCPERFKEYRPRVHHMKVVHNVQNLNCTCLACRGPAPAGLPKQPPDAGDKRFECPLCGKKFKERKVLVAHRVVHTGESDFKCNVCSKAFGRFKEYRPRVHHMKVVHNVQNLNCTCLACRAPAAADIPKQPPEAGDKRFECPLCGKKFTARKGLARKKRRKAENLRDKMSKRNACILLEYSHVSPFKWLKNGFLCFFCDTKYTDPKALREHTRVNHADEIIMDFVGRVKKHDLVKVDVARVDCRLCPEPVHCIDSLKRHLLDCHDKKIKADYGDGVIPYKLDTNEFQCHLCKIPFNVFITLNNHMNSHYTNYICETCGKGFATGKRLASHALSHQTGVFPCAACGESFPSRAARTNHTNRAHREAMKFKCPQCGECFKSYLERNKHRRLVHNVTSLEYKCSMCPKVFPLAGKRTYHIKQVHMRERNHSCSVCEWKFFSKTELQDHMIKHGGERIYECAVCKKSYARKPTLREHMRIHSDDRRFVCPVCGKAFVQNCSRKYHMKAHHPEEVVDDPELLREHNVTEHEMPPVKKYVKKMKKYEMVKVDITNVGCRLCDDPIRDFSTLKQHLSHVHSKTIDPKFSDGALPFRLSLGTLHCELCVEKFTEFKTLNQHMNKHFRNFICEACGAGFVTPERLRTHGLSHESGAVPCALCDKVFRSAFARNEHVANIHRQVKRHRCPHCREAFRNYFQRNKHITAVHNVKCKEFACSLCGKVFTLSGKLTHHVKTVHLKQKRHTCSVCNWKVYSKSELKEHMIRHGGERIHECAVCKKSYARKYTLREHMRIHDNDRRFVCAVCGKAFVQNCSLKHHVKVHHPDAGGIARSAAARGSETIRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -