Ilum004186.1
Basic Information
- Insect
- Ignelater luminosus
- Gene Symbol
- Prdm15
- Assembly
- GCA_011009095.1
- Location
- Ilumi1.2:154965-158638[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.98 95 4.3 0.1 2 23 214 235 213 235 0.92 2 13 0.0018 0.17 13.0 4.6 3 23 245 266 243 266 0.95 3 13 9.3e-05 0.009 17.0 2.5 1 23 364 386 364 386 0.99 4 13 0.0073 0.71 11.0 5.4 1 21 390 410 390 411 0.94 5 13 0.00066 0.064 14.3 0.9 1 23 418 441 418 441 0.97 6 13 0.64 63 4.9 5.4 1 19 445 463 445 466 0.92 7 13 0.00028 0.027 15.5 2.7 1 23 476 498 476 498 0.98 8 13 0.00034 0.034 15.2 0.7 1 23 511 533 511 533 0.98 9 13 0.00015 0.015 16.4 2.7 3 23 540 560 538 560 0.98 10 13 0.0027 0.26 12.4 3.1 2 23 566 587 565 587 0.97 11 13 5.3e-05 0.0051 17.8 2.1 1 23 593 615 593 615 0.98 12 13 0.0015 0.15 13.2 0.8 2 23 618 639 617 639 0.96 13 13 0.00033 0.032 15.3 2.2 1 23 644 666 644 667 0.96
Sequence Information
- Coding Sequence
- ATGGATATAGATACTTCAAGACAGATAATTGTTTTGGACTTGATATGTGGGATTTGTGGAGAAACTCACCAGTACTCAGAATGTGGATTAATAGAAATAAAAAGCCATGTATTAGACAGAATCATCCCATCGAAAGCTCGTTCAACACTACCAGATTTTCTTAGTTTAGTAACAATGGCCGATGGAAGTTTTTGTATTATGACTAATACTTCACTTGAGAAAGGTACAAAATTTGGGCCATTGGAAGCACCTAAATTATTTACTTTAAATCCAAGTATTATATTTCCGATGAAGTTATTTAATTGCGGAATAGAGGATTTATCAGAGTATTATTTAGATACAACTGATGAAAATAATTGCAACTGGTTGATTTTTATTCCTTCTGCTCAAACTGCTGAAGAACAGAATTTAATGTGCTTCCAAGAAAAAACTGAAATATTTTATGTTGTTATTAAAGATATAAAGGAAGGAGAATTTTTAAAAGTTTGGTATTCACCTTATTATGCAAAACAAATGAAGAAAAATATGCTGTTTGCGCAAAATTTACCAGATGACTGTGATAACAGTATGAATAATATTAAAACTACCTTAGAACCCATAATTAAAAAGCAACAAAATCTAATGAAACGAGAAAATTGGACTTGTAAATTTTGTGGGAAATTGGAGAGTGATGTTTCGCTCTTTGCTAATCACATCTTAGAGCACTACAGAAAAAAAGTTGTTAAAAAGCATTGTGGATTCTGTGAGCAATCATTTACAACTCAAAAAAAATTAAGAAGGCATGTTCAATCGAAACACAAAAAAGAATTAACAAGCAATTCTAAAGCAACAAAAATACCTCCTGATAAAACAGGGAATAAAGATGTGTTAGTTGGAGATCCTTTATTAAATGTTATATTGAATGATAGTCTTGATAATACAAATTTGGTAATGCCCAATATTGAGCTAAATCAAATGGGTGTGGCTTTAGAAAGTCAAAATCTGCTTTTGGAAAGTGATAGCTTAAATCTAAACGTTGATAATTTATTAACAGAAAATGTCAAGGAGTTAGATCATTTTAATTTTGAGATTGGTGAGAGTCAAGAGCAATATGTATGTGATGTGTGCCTTAAAGGTTTTTCAAAACTGCATTACCTCACACAGCATTTAAGGAAGCATACTGGACGATATACCTGCCAGTATTGTTTAAAGGTCTTTTGTCGTCGTGAAAATCTAGATTCACACAAATGCAGTAATCTTAAGACACCAGAATTTCAGTGTAGTTTATGTGAGCGTAGTTACATGCTTAAGAAATATTTAGTAAGACATATGAATCTTGCTCACGATAGAAAGCACACTTGTGAAAATTGCAATAAACACTATAATTCTAATAAAGAATATTTAGAACATAATTGTTCAGCAGTACCTGATAGTTTTAAAACTACATTTACCTGTGTTACATGTAGTAAAAAGTTTTTTCGTGAGGTTTATCTAAGAAAGCATTTGAAAGTTCATGAACGTCGCAAACAGAAATTAGAATTGAAAGCGAATTTTATTTGTGAAGTATGTGCTCAGCGCTTTAGTACTAGAAAAGGTTTGATAACACATAAGCAAACTCATATGGAACCTACATTTGGATGTGAGATTTGCAATAAGAAATTCCATCGCCAAGAAACGCTTAATGAACATAGACTGACACACAGTGACACTCAGGTAACATGCACAGTTTGCCATGCCAAACTTAAAACAAAAAAAAATCTGTCACTTCATATGAAACAACATACTCAAGGAAAATCTCACAAATGTGAAATATGCTCAAAAGAATTTTATTTACGTTCAAATCTAGTTACCCATCTTAAAATACATTCAAAGACATGTCCCATGTGCAATAAAACTTTTCTTACAAAAGAATTACTCTTAGCACATAAAGCAAAGCATTTTAAAGAATTTTATGAATGTCCATTGTGCAATAAAATAGTGAAATTAAAAAGATCGCTAAAAAATCATTTGAAAAATCATCATCCTGAGCAGGATGTTCTTGATATCATGCTGAAAATAAAGCCAAAATCAGCAAATGTAGAACTAAATGATATTAGTGATACTGACGATGTTCGTAATGAAATTAATAACATTTTGAAAAGTGGTAGGAAACAATTATTTACAAATTACATTAATAATAATAACCATAACAATGAAGAAATCAATACAAATATGAACAATATCGACAATTTAATTTCTGAAAACAATCATAATAATTTAGAAACTATTGATACTGAAAATCTGTGTAATAACAATACAGTTGAACAAATATCTTCAAATGATATCAATAATGAAAATAATAATGTAGGAATTAATCTGAGTATGCATAGTCTACAAAGTTTAACATCTGAAAATGATCAAGATAATTTGGAAACTATCGTAAATCGATTTGAGAATATGATGAATAACTATGATTCTAATAACCAAAGTAATTTGTTAATTGATGGTCCTGGTGAGATGGTAGGAAATGAAGAGCAAGGAAGAATTTTAGATTTTAACAATTTTGAAATAGATTTAGAGAGCAGTTTTGATCTACATCAGAATTCAAATGTTAGTAATGAAGAAGTCCATTTGTCAATGCCTGATTTGCTGGAGACAGATCAAGAAATCACTTTAAGTGAAAATGCTTATGTGTTGGAAGATGGAACTATTGTTGAACCGAAAGGACCAAAAGGAAACATTGTTATTTACATACTAGATAAGAATTTATAA
- Protein Sequence
- MDIDTSRQIIVLDLICGICGETHQYSECGLIEIKSHVLDRIIPSKARSTLPDFLSLVTMADGSFCIMTNTSLEKGTKFGPLEAPKLFTLNPSIIFPMKLFNCGIEDLSEYYLDTTDENNCNWLIFIPSAQTAEEQNLMCFQEKTEIFYVVIKDIKEGEFLKVWYSPYYAKQMKKNMLFAQNLPDDCDNSMNNIKTTLEPIIKKQQNLMKRENWTCKFCGKLESDVSLFANHILEHYRKKVVKKHCGFCEQSFTTQKKLRRHVQSKHKKELTSNSKATKIPPDKTGNKDVLVGDPLLNVILNDSLDNTNLVMPNIELNQMGVALESQNLLLESDSLNLNVDNLLTENVKELDHFNFEIGESQEQYVCDVCLKGFSKLHYLTQHLRKHTGRYTCQYCLKVFCRRENLDSHKCSNLKTPEFQCSLCERSYMLKKYLVRHMNLAHDRKHTCENCNKHYNSNKEYLEHNCSAVPDSFKTTFTCVTCSKKFFREVYLRKHLKVHERRKQKLELKANFICEVCAQRFSTRKGLITHKQTHMEPTFGCEICNKKFHRQETLNEHRLTHSDTQVTCTVCHAKLKTKKNLSLHMKQHTQGKSHKCEICSKEFYLRSNLVTHLKIHSKTCPMCNKTFLTKELLLAHKAKHFKEFYECPLCNKIVKLKRSLKNHLKNHHPEQDVLDIMLKIKPKSANVELNDISDTDDVRNEINNILKSGRKQLFTNYINNNNHNNEEINTNMNNIDNLISENNHNNLETIDTENLCNNNTVEQISSNDINNENNNVGINLSMHSLQSLTSENDQDNLETIVNRFENMMNNYDSNNQSNLLIDGPGEMVGNEEQGRILDFNNFEIDLESSFDLHQNSNVSNEEVHLSMPDLLETDQEITLSENAYVLEDGTIVEPKGPKGNIVIYILDKNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -