Ilum018858.1
Basic Information
- Insect
- Ignelater luminosus
- Gene Symbol
- -
- Assembly
- GCA_011009095.1
- Location
- Ilumi1.2:28456-31004[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0018 0.18 12.9 1.3 2 23 110 131 109 131 0.96 2 15 1.2 1.2e+02 4.0 0.5 2 13 137 148 136 152 0.86 3 15 0.001 0.098 13.7 0.3 1 23 170 192 170 192 0.95 4 15 0.00049 0.047 14.7 0.4 3 23 197 218 196 218 0.94 5 15 0.00031 0.03 15.4 2.5 1 23 227 249 227 249 0.97 6 15 0.0027 0.26 12.4 0.1 1 23 254 276 254 276 0.97 7 15 0.07 6.9 7.9 3.2 2 23 283 304 282 304 0.97 8 15 0.066 6.4 8.0 3.3 1 23 307 330 307 330 0.98 9 15 0.0017 0.16 13.1 3.6 2 23 340 361 339 361 0.97 10 15 0.081 7.9 7.8 5.1 3 21 370 388 368 392 0.87 11 15 4.5e-05 0.0044 18.0 1.1 2 23 403 425 402 425 0.96 12 15 0.00033 0.032 15.3 1.9 1 23 432 454 432 454 0.98 13 15 9.5e-06 0.00092 20.1 0.4 1 23 461 484 461 484 0.94 14 15 1.9e-06 0.00018 22.3 3.5 1 20 490 509 490 512 0.95 15 15 7.1e-05 0.0069 17.4 1.2 1 23 518 541 518 541 0.96
Sequence Information
- Coding Sequence
- ATGCGTCATCTTCGATTAAATAATAAAAATAGTAACAGCTTATCTTCTTTTAAAGCTCAGATTGCTAGTCTTTTACAGAGTATCAATAATTTTAGTGAAAATGATAGGAAAGAGGCTCTTAGATATGTGCAACAGTTAGTCAATGATATTAGTGAAATTACAGCTGGAAAATCTGAAAGTGATTTACAGGAAAATGTTTCTATTATTACAGAAACGCCTACAACAGTATCACCCAAGAAAAGAATTAAATTACCTATTAAGAAACGAAAGAATTCTGTGATTAAGAAACCTCATATAAGTATTAGTAGACAAAGACTTAAAGTATTAAAATGTAAAGTTTGTAATGAAACAAGGAAAACTAAATTAAGTTTATTAAAACACATGGAACTTCATATAGGAACACCAATATCATGTACATCCTGCCATCGGACATTTAATAGCAGGCTATCATTTGATTTCCACCTAGCTCACTTATGTAGAAAGAAAAAGATGTTGACAAATAAAAGATTCAAGTGTCCAGAATGCCCACAGAAGTTTACATTACAAAGATATTTAGATTTACATGTAGAAGGACATAAAAGAAATAATTGCTCATATTGTGATGCTGTATTAACTCGTCGTGAACATCTCGCACAACATATGTTAGAAGTACATAAGATTAAATTGGAGAAATCTATGTTTGCTTGCAGTTATTGTGAAAAAAGATTTGTAAAACGTCAATCTTTATATTACCATCTCCGTCAACATATTCCAAATAAATTTATCTGCTTAGATTGTGGTACTATTATTAATACTTCTGAAGAATACAATGAACATATCAAAGTGCATGATCAACAGAAACCATGGCAATGTTCTCGATGTAAAGATAGATTTTCTCGTAGACAACAATATTTATATCATTTAAAAAGACATGATCGTTACAAATGTCTGACTTGTAAAGAAAATTATGCATCTAAAGTTCACGCATATAAACATTATAAACGTGGCCATCTCGTACAAGGTTTAGAACCACAATTGCACTGTCCTCACTGTCCAGCAGCATTTCATCGTAACTTGTTGTTACAAATGCATATACGCAAACATAAAGAAGACACGGCCACCATAAATTGTAAATTCTGTGATAAAGTATTTCATTCACCATATCAGTATTACAAACATTGTAAAACTACATTGCATGATAAAAACAGTCCTGAAATTAGTCAATTAGTTTGTGAAAACTGTGGAAAACAATTCACAAAAAAATATGTCTTAGAGCAACATTTAAAACGTTTTCATGGCACAAAACATACAAAGTTTTCTTGTAAATATTGTGATTACCAAACTCAGTTTAAACCTAATTTAGAAAGACATATGAATTTACATTTTAGCGATAAGAAACAATTCATGTGTGATCACTGTGGAAAAACTTTTTCAAATATTGGTGGTCTCACGGATCACATTGACTACATTCATGTCCAGGAAAAGCAGTTCAAATGTGGAGAATGTGATAAAAGCTTTAAAAGAAATTCAGAATTGATACGTCATCAGTCTTGTCATTCCGATGCTCGTCCATATGTATGCGGTTTATGTGGACAGGCATATAAACGTACAAACCACTTGAGACGTCATGAAAAAAATGCGCATGAACTTATTATAAAAAATAAGAAGGTGCAACGTTTAAAAACTGACAGTACTGGAGCTGTAATTCCCATACCATCAGAACCAAAGAATTCTATCAAAGATAAAAAGATAATGAAAAAGACAGAAGTTAGTGAGCCGATTTATTCACTTACAAATGAACAGATTGGAGAATATTATGGTAGTACGGTATCTGTGATTAATTCTGTTTCTTTACCAAAAGCTATTAGTAATAATCTTATACCGATGGATGCAGATAGTTTTAACCAACAGGAATTATGGGAAGGCAAACTAGACTTGCCCTTGGAAAAGACTAATGGAATTTTGTATAATACTAATCCTACAAGTAATGTAACACAGATGTCGCTTTTAAATTCACATGAAAATGATTTGTTAACAATTAATGTGATGGATCAGTTAGTTAAGTCATTACTGCCTTCTAAAGATCTACAAATGATAGATTGTCAAGAATTCAACGATTATACAACACCATTAGATTATAATAATGTTGCTTCTGCTGCAATAAGTAGAGAAAATTCTGTTTTGACAGCAAGCCAAAAAATTGGTGTAAATGATATTTCATGGTGA
- Protein Sequence
- MRHLRLNNKNSNSLSSFKAQIASLLQSINNFSENDRKEALRYVQQLVNDISEITAGKSESDLQENVSIITETPTTVSPKKRIKLPIKKRKNSVIKKPHISISRQRLKVLKCKVCNETRKTKLSLLKHMELHIGTPISCTSCHRTFNSRLSFDFHLAHLCRKKKMLTNKRFKCPECPQKFTLQRYLDLHVEGHKRNNCSYCDAVLTRREHLAQHMLEVHKIKLEKSMFACSYCEKRFVKRQSLYYHLRQHIPNKFICLDCGTIINTSEEYNEHIKVHDQQKPWQCSRCKDRFSRRQQYLYHLKRHDRYKCLTCKENYASKVHAYKHYKRGHLVQGLEPQLHCPHCPAAFHRNLLLQMHIRKHKEDTATINCKFCDKVFHSPYQYYKHCKTTLHDKNSPEISQLVCENCGKQFTKKYVLEQHLKRFHGTKHTKFSCKYCDYQTQFKPNLERHMNLHFSDKKQFMCDHCGKTFSNIGGLTDHIDYIHVQEKQFKCGECDKSFKRNSELIRHQSCHSDARPYVCGLCGQAYKRTNHLRRHEKNAHELIIKNKKVQRLKTDSTGAVIPIPSEPKNSIKDKKIMKKTEVSEPIYSLTNEQIGEYYGSTVSVINSVSLPKAISNNLIPMDADSFNQQELWEGKLDLPLEKTNGILYNTNPTSNVTQMSLLNSHENDLLTINVMDQLVKSLLPSKDLQMIDCQEFNDYTTPLDYNNVASAAISRENSVLTASQKIGVNDISW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -