Basic Information

Gene Symbol
-
Assembly
GCA_011009095.1
Location
Ilumi1.2:51860-69835[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.012 1.1 10.4 0.0 1 23 319 341 319 341 0.98
2 28 1.8 1.8e+02 3.5 0.3 1 23 373 396 373 396 0.86
3 28 0.024 2.3 9.4 0.1 1 23 630 652 630 652 0.98
4 28 1.2 1.2e+02 4.1 0.5 1 23 684 707 684 707 0.89
5 28 9.7e-05 0.0095 16.9 1.0 1 23 713 735 713 735 0.97
6 28 0.00022 0.021 15.8 1.1 1 23 741 764 741 764 0.96
7 28 0.015 1.4 10.1 1.2 1 23 772 794 772 794 0.97
8 28 3.4e-05 0.0033 18.4 0.6 1 23 801 823 801 823 0.97
9 28 0.00095 0.092 13.8 2.4 1 23 829 851 829 851 0.98
10 28 5.8e-05 0.0057 17.6 0.9 1 23 857 879 857 879 0.97
11 28 0.0016 0.16 13.1 0.4 1 21 885 905 885 906 0.95
12 28 0.023 2.3 9.5 0.0 1 23 1120 1142 1120 1142 0.98
13 28 0.0013 0.13 13.4 0.8 1 23 1203 1225 1203 1225 0.96
14 28 0.0014 0.13 13.3 1.5 1 23 1231 1254 1231 1254 0.96
15 28 0.0013 0.12 13.4 0.6 1 23 1262 1285 1262 1285 0.95
16 28 1.2e-06 0.00012 23.0 0.7 2 23 1292 1313 1291 1313 0.96
17 28 0.0015 0.14 13.2 2.6 1 23 1319 1341 1319 1341 0.98
18 28 0.00013 0.013 16.6 0.4 1 23 1347 1369 1347 1369 0.98
19 28 0.0021 0.2 12.8 0.5 1 22 1377 1398 1377 1398 0.95
20 28 0.00014 0.014 16.4 1.2 1 23 1637 1659 1637 1659 0.97
21 28 0.056 5.4 8.3 0.3 1 23 1663 1685 1663 1685 0.96
22 28 0.23 22 6.4 0.6 1 23 1691 1714 1691 1714 0.97
23 28 0.00011 0.011 16.8 1.9 1 23 1720 1742 1720 1742 0.97
24 28 0.0026 0.25 12.5 1.3 1 23 1748 1771 1748 1771 0.93
25 28 6.2e-06 0.0006 20.7 1.7 1 23 1778 1800 1778 1800 0.98
26 28 9.8e-05 0.0095 16.9 0.8 1 23 1806 1828 1806 1828 0.97
27 28 0.0035 0.34 12.0 1.7 1 23 1834 1856 1834 1856 0.98
28 28 1.1e-05 0.0011 19.9 0.4 1 23 1862 1884 1862 1884 0.98

Sequence Information

Coding Sequence
ATGTTAGAGGACGCATCTGATTCATATATGACTGTGCAACGGTCCACTTCAGTGGCAGTATATTCTGAAAGATGGATTGGTCGTGCTAAACCTATAACACTTATGGAGACATTAAAAACCTATGGTCCTTGGAATCCCAAACAACAAAAAAATCCACTAGGTAAGGTTTGGATTAACTGCCATAGCTTTTCTCAACGTGGATGTCTTGCAAAATTGCATCATGGAACTCATTCAATCGGCTATTATGCAGATTTTGTTTTGGCAATAGTTATGGGATCTGTCAATCCATTAGTGATAGAAGAATGTATTGATATGAAAAGTGAGCTTGATGACAATACAAACAATTGTAAAAAAGGCAAATGTGCATCTCGCGCATCTTCTACAAAATCAAGCAGTCAAAAGAAGAAATTCAAAACGACTGACAACATTGGTAAAAGCGTTAGAAACTTAAAGACCAAAAACATCAAGTCTTTTCCAAGGTCAAACTATCCGAATACGATGTCTAGTTCCAAAGCTGGTAAAATGTCAAAAACTAAAACCGCTAAATCTTCTCCAAAACCAAACAGTCCAAATAAACTATCCAAATTGAGTACCAACATTGGAAATAATCAGAAGAATATCACCAAATCTTCTCCAAGATCGAGTAGGCTAGAGAAAACATCTAATGTCAATGTTAATAGTAGTAAAGTCATAGAAAATGAAGAAACCTCCAATGAAGACTGTCAGAATCTATCAACTAAACAAGTGCCAAAATCTGGCGATATTATCAAGAAGCCCAAGGTTATATTTGGAAGACCAATTTATTATTGTCACATATGCAATGATCAAGTGTTGCTTACCAGAGTACAGTTACAGGAACATTTTATGAAACATGGAATTCCTGAAGCTACTAAAATTTGGTCCTACTATAAAAAGGCAAGATCTAAATGCAATCGTGCCTCTTTACCCTCTGTTTATCCATGTGAGATCTGTTCTGAATATCTTCCAAATCAAGCAGAACTGGACGAACATTTAAAAACGCACGATGATCAGTTCTTTTGTGATGTTTGTAATGTTGGATTTAAGTTGCTCATTGATCATACATACCATGTACAAGAGCACACTGAAGATAAATTGTATAGATGTCCTTTGTGCGAATATAAAGTAGATACACGTGGTAGAATCAAATTACACTTGTATGCTACACATGAACAGTTTAGAAAATTCAAATGTGAAATTTGCGTCATAGAAGAACATATTGATATAAAAAGTGAGCCTGAGGACTTCATAACCAACTATAAAAATGGCACATGTACATCTCCTATATTTTTGGCACAACCAAGCATGGAGAAGAAGAAATCCAAAACAGCGAACAACATTGATAAAGGCATTAGAAACTCAAAGACCAAGACTGACAAGTCATGCTACCCAAAGAAAACACCTAAATTGGGTTCCAACATTGGTAAAGCTTCAAAGGCTAAAACCACTAAATCTTCTTCAAAACCAACCACTTCCAATACTAAATCATCCCAATTGAGTACAAGCATTAGAAATAACCAGAAGAATAAAATCACCAAGTCTTCTGCAAAATCAAGTAGGTTAAAGAAAACATCTAAAGTCAATGTTGGTATTAGTAGTAAAGTTGTAGAAAGTCAAGAAAATTCCAATAAAGATTGTCAAGATCTACCAGTTAAAGAAGCCAAAGAATCTGATGAAATTGTCAAGAAGACCAAAGTTATATTTGGAAGACCAATCTATTACTGTCATGTGTGCAATGATCAAATCTTGCTTACCAGAGCACAGTTGAGAGAACACTTTATAAAGCATGGAATGCCCGAAGCTGCAAAAACCTGGTCTTATTATAAAAAAGCAAGAGCCAAACGCAATCGTGCTTCTGTACCCTCAGTTTATCCATGTGAGATTTGTTCTGAATATCTTCCAAATCAAACAGAACTGGATGAGCATTTAAAGAAGCACGATGATCAGTTCTTTTGTGATGTTTGCAATGCCGGATTTAAGCTGCTTATTGAACACACATTTCATGTACAAGAGCATAGCGAAGACAAATTGTATCAGTGTCCTTTGTGTGAATATAAAGTAGACACACGTGGTAGAATCAAATTGCATTTGTATCAACAACACGAAAAGTTTAGAAAATTTAAATGTGAAATTTGTGGTAAAGGTTTTTCTCTATTTTCTTATCTTGAAGAACATAGAAATTTCCACACTGGAGAAAAGCCTTTTCAATGTGATATTTGTGGCCTTAGCTTCATTTACGCACGATATTTAAAATCACACAAAACTAAGCAACATTCACAAAACACCAGCAAGAGATTTAAGTGCTCAGTGTGTAGTAAAGGCTTTACTTGGAAGAAGAGTTACGAAAACCATGTAGAAAGCCACGATAGTGGCAACACTAATTTCATATGCGATATTTGTGGAAAAACTTTTAAAACTAAACGCGCTATAGCCACGCATAAAAAAGTGCATAACGAGGATAGACCGTATAAGTGTAAATTTTGCGATATGAGTTTCAAAAAGAGCAGTTCGAAAATTGATCATGAAAGGATTCATACTGGCGTAAAACCACATCAATGCCCAGAGTGTGGTAAAGGTTTTACACAACGTACTCCTATGATGCGCCATTGGCAAAACCATACTGAAAAGGATTCTTACAGTTGTTATTTATGTGCAAAGACATTTTCTTCAAAGATGGACCTTATCAACCATGTGAAGTCTTGTCGACGTTCAGAAAAGTTATATGTCAACCCATTAGTAATAGAAGAACATTTTGATATAAAAAGAGAGCTAGAAGATCACACAACCAATTATTCTAAGAAAGGCGAACGAACTCGTGTAACTTCTGCAAAATCATGCAATCCAAAAAAGACATCTAAAACAGTTGGCAAAAACGGTAAAAACATTAGAAGTTCAAGAAATAGAAATAGCAAGTCTTTTCCAAAGAAAACATCCAAATTAGGTTCCACTACTGGTAAACAGTCAAAAACTAAAAGCACCAAATCTGCAAAACCAAGCAGCCAAAATGAAACATCCAAATTGAATGCAAGCATCAGAAATCAGAGAAATAAAAACATCAAGTCTTTTTCGAGATCAAGTAGCCTAAAGAAAACACCTAAAGTTAAAAATCGACAAATCTCAAAATCTAATTTATCTCAAAATAGCGAAATCACCAAGAAACCCAAAATCATCTTTGGAAGAGCAATCTATTATTGTCATGTATGCAACGATCAAATCTTGCTTACTAGAGCACAGCTGCGAGAACATTTTATAAAGCACGGAATGCCCGAAGCAAGTAAATCCTGGGCTCATTTTAGACGAGCAAGAGCAAAACGTAGTCGTTCCTCTATGCCTTCCGTTTATCCGTGCGAAATCTGTTCTGAATATCTTCCAAACCAAGCAGAACTAGATGAACATCTAAAGAAGCACGATGACCAATTTTTTTGTGACATTTGTAATGTTGGATTTAAGTTGCTCATTGATCATACGTATCATGTGCAAGAACATAGTGAAGATAAACAATACCAATGTCCACTGTGTGCGTTTAAAACGGATGCACGTGGTAAGATCAAATCACATTTGTATTCGTTACACGAACAATTTAGGAAATTCAAATGTGAAATCTGTGGCAAAGGTTATTCTATATTTTCTTATCTTGAAGAACATAAGAATTTTCACAATGGGGAAAAGCCTTTTCAATGTGATATCTGTGGCCTTAGCTTCATGTATACTCGATATTTAAAAGCACACAAAACTAAACAACACTCACAAGTATCTCGGAAGAAATTTGAATGTTCAATGTGTCAGAAAAGTTTTGCTTTGAAGAAGGCTTATGATAAACATATGGCAAATGTTCATTCGTTCGAAGTTAATTTAATATGTGATATTTGTGGGAAAACGTTTAGAACTAGAGATGGTTTAAGGAAGCATTATAAATTACACAGTGACGATAGACCTTATAAGTGTAAATATTGCGATATGGGTTTTAAAAGTAGCGGTTCGAAAGTTCATCATGAAAGGATTCACACTGGAGTAAAACCACATCAGTGCCCAGTGTGTGGAAAAGGTTTTATACAACGTACGCCTATGGTTCGACATTGGCGTAACCATACTGAAAGGGAATCTTACTCTTACAGTTGCTATACGTGTCAAAAGAATTTTTCGACGAAACTAGCTCTTATTAACCATGTAAACACTTGTGGTCGTTTAAAGAACACCTTACGAGATCCCAAATATAAAATGAACAACAACACATGTGATTGCCCTCTGCTCACCATCCAGCAATTCAATCTCAGTGCTTGGAGTAACCCAACAATTCCGCCCGGAAACGAAGAACCTTTAAAATGCTTGCAGGAAATTCACGAACTCCGATGGGTGCATTGCGATGCACTTTTAATAGAAGCAGACCTGCTTTATGCTTTTGCTCCCACAGGTGATGATATTATCGACGAAGAACTGGGATTTGCACCAGAGCAACTTTCCGTTTCCTTCCATACTGACCAGGTCAGACATTGCGTGTTTCTTCGTCCACTATTGAGTAACCGTCCATTTAAAACAGAAGTACCTCTTGAAATAAAAGACGAACTAGATAACGACAATATAGCAAGTTATAACATAAATATTACTTGCAAATCTTTTCCAAAATCAAACAGCACCAAGAGAGCATCTAAAAGCCGTAGAAATCAGAAAAGTATTCCGAAAGAAAAAAAATTCAATGAGATTGTCAAGAAGCCCAAGGTCATATTTGGAAGAGCCATATATTATTGTCACGTTTGCAGCGATCAAGTTTTACTAACCAGGGCTGAGTTGCGAGAACATTTTATAAAACATGGTATGCCAGAAGCTGTAAAATCTAGTATGCATTATAAAAGAGCAAGAGCAAGACGTAGTCGTGCTTCTTTACCTTCTGTTCATTCATGTGAGATTTGTTCTAAAAACTTTCCAAATCAATCAGAATTGAGTGGACATGTCAAGAAGCACGAAGATCAATTCTTTTGCGATATATGCAATGCTGGATTCAAACTACTCATTGACTACACTTACCACATGCAGGAACATAACGAAGATAAACTATTTCAATGCCAACTTTGTGGATTTAAAGCAGACCAACGGGGTAAAATCAAAGCTCATTTGTACACGCAACATCAACAATTTCGAAAATTCAAATGCGATGTGTGCGATCAAAGTTTTTCTCAATTTTCATACCTTGAAGAACATAAGAATTTCCACACGGGATTAAAACCCTTTCAGTGTGATATCTGTGGTCTTAGTTTCATGTATACTAGGTATTTAAGAGCACATAAAACTCAACGTCACCCAGATCCATTGAAACGATTTGAGTGTTCTGTATGCCAGAAAAATTTTGCTACAAAGAAGAATTACAATAATCATTTGAGAATTCATAGTGGAAGTTCTAACTTCATGTGCGACATTTGTGGAAAAACTTTTGGAACAAAGCAAGCCATAAGAACGCATAAAAGGTTGCACAGCGATGATAGACCTTATAAATGTAAATTTTGTGATATGAGCTTCAAAAAGAGCGGTTCTAAAGTTGATCATGAAAGGATTCATACTGGTGTGAAACCACATCAGTGCCCAGAATGTGGAAAGGCTTTTATTCAACGTAGTCCTATGGTTCGGCATTGGCGTAACCATACTGAAAAGCAATCTTATATAGATGCAGTTAAAGATTATAACTCGAATTCACCAAGTAGTTTACATTTAATCGAAATTCAGCCAGAAAATTCTACATTCCTTTATCTGCAAGCATCTTCTGCCTTTCCTTCATTGTCTTGGCTTCTTTTTTATCCAGATACTTGA
Protein Sequence
MLEDASDSYMTVQRSTSVAVYSERWIGRAKPITLMETLKTYGPWNPKQQKNPLGKVWINCHSFSQRGCLAKLHHGTHSIGYYADFVLAIVMGSVNPLVIEECIDMKSELDDNTNNCKKGKCASRASSTKSSSQKKKFKTTDNIGKSVRNLKTKNIKSFPRSNYPNTMSSSKAGKMSKTKTAKSSPKPNSPNKLSKLSTNIGNNQKNITKSSPRSSRLEKTSNVNVNSSKVIENEETSNEDCQNLSTKQVPKSGDIIKKPKVIFGRPIYYCHICNDQVLLTRVQLQEHFMKHGIPEATKIWSYYKKARSKCNRASLPSVYPCEICSEYLPNQAELDEHLKTHDDQFFCDVCNVGFKLLIDHTYHVQEHTEDKLYRCPLCEYKVDTRGRIKLHLYATHEQFRKFKCEICVIEEHIDIKSEPEDFITNYKNGTCTSPIFLAQPSMEKKKSKTANNIDKGIRNSKTKTDKSCYPKKTPKLGSNIGKASKAKTTKSSSKPTTSNTKSSQLSTSIRNNQKNKITKSSAKSSRLKKTSKVNVGISSKVVESQENSNKDCQDLPVKEAKESDEIVKKTKVIFGRPIYYCHVCNDQILLTRAQLREHFIKHGMPEAAKTWSYYKKARAKRNRASVPSVYPCEICSEYLPNQTELDEHLKKHDDQFFCDVCNAGFKLLIEHTFHVQEHSEDKLYQCPLCEYKVDTRGRIKLHLYQQHEKFRKFKCEICGKGFSLFSYLEEHRNFHTGEKPFQCDICGLSFIYARYLKSHKTKQHSQNTSKRFKCSVCSKGFTWKKSYENHVESHDSGNTNFICDICGKTFKTKRAIATHKKVHNEDRPYKCKFCDMSFKKSSSKIDHERIHTGVKPHQCPECGKGFTQRTPMMRHWQNHTEKDSYSCYLCAKTFSSKMDLINHVKSCRRSEKLYVNPLVIEEHFDIKRELEDHTTNYSKKGERTRVTSAKSCNPKKTSKTVGKNGKNIRSSRNRNSKSFPKKTSKLGSTTGKQSKTKSTKSAKPSSQNETSKLNASIRNQRNKNIKSFSRSSSLKKTPKVKNRQISKSNLSQNSEITKKPKIIFGRAIYYCHVCNDQILLTRAQLREHFIKHGMPEASKSWAHFRRARAKRSRSSMPSVYPCEICSEYLPNQAELDEHLKKHDDQFFCDICNVGFKLLIDHTYHVQEHSEDKQYQCPLCAFKTDARGKIKSHLYSLHEQFRKFKCEICGKGYSIFSYLEEHKNFHNGEKPFQCDICGLSFMYTRYLKAHKTKQHSQVSRKKFECSMCQKSFALKKAYDKHMANVHSFEVNLICDICGKTFRTRDGLRKHYKLHSDDRPYKCKYCDMGFKSSGSKVHHERIHTGVKPHQCPVCGKGFIQRTPMVRHWRNHTERESYSYSCYTCQKNFSTKLALINHVNTCGRLKNTLRDPKYKMNNNTCDCPLLTIQQFNLSAWSNPTIPPGNEEPLKCLQEIHELRWVHCDALLIEADLLYAFAPTGDDIIDEELGFAPEQLSVSFHTDQVRHCVFLRPLLSNRPFKTEVPLEIKDELDNDNIASYNINITCKSFPKSNSTKRASKSRRNQKSIPKEKKFNEIVKKPKVIFGRAIYYCHVCSDQVLLTRAELREHFIKHGMPEAVKSSMHYKRARARRSRASLPSVHSCEICSKNFPNQSELSGHVKKHEDQFFCDICNAGFKLLIDYTYHMQEHNEDKLFQCQLCGFKADQRGKIKAHLYTQHQQFRKFKCDVCDQSFSQFSYLEEHKNFHTGLKPFQCDICGLSFMYTRYLRAHKTQRHPDPLKRFECSVCQKNFATKKNYNNHLRIHSGSSNFMCDICGKTFGTKQAIRTHKRLHSDDRPYKCKFCDMSFKKSGSKVDHERIHTGVKPHQCPECGKAFIQRSPMVRHWRNHTEKQSYIDAVKDYNSNSPSSLHLIEIQPENSTFLYLQASSAFPSLSWLLFYPDT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-