Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.5e-11 2.5e-09 37.3 0.0 1 39 78 117 78 121 0.90

2 4 1.3e-12 2.2e-10 40.6 0.1 1 39 132 170 132 174 0.95

3 4 7.1e-17 1.2e-14 54.3 0.0 1 45 187 232 187 232 0.97

4 4 4.6e-16 7.8e-14 51.7 0.0 1 40 239 279 239 283 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.5e-11	2.5e-09	37.3	0.0	1	39	78	117	78	121	0.90
2	4	1.3e-12	2.2e-10	40.6	0.1	1	39	132	170	132	174	0.95
3	4	7.1e-17	1.2e-14	54.3	0.0	1	45	187	232	187	232	0.97
4	4	4.6e-16	7.8e-14	51.7	0.0	1	40	239	279	239	283	0.93

Coding Sequence: ATGATGGACATGGATGCAACTCATATGTCTGGTCCTGATCATTCAATGGAAAGTCACGAGGATGCAAAGAGAGCTATGCATACTATGATGGTTACACCAGAATTAATGGGCATGATGCCCGGCAGCTCAGGTAGATTAGACTCATCAAACGGTGATAATGTTCACTTAAAGAGTAATGGACATTCAGATCATGTAGCAACCAGGGCACATGGTGGTGGTCCAAAAACATGGACTCAAGAAGATATGGAATTAGCTTTAGATGCCTTAAGAAATCATAATATGAGCCTTACGAAGGCTTCTGCAACGTATGGTATTCCATCCACTACTTTATGGCAGAGAGCACATAGGTTAGGTATTGATACACCAAAAAAGGAAGGGCCTACTAAATCATGGACTGAAGAAAATTTAAATTCCGCGCTTGAAGCTTTACGAACAGGAACTATATCAGCAAATAAAGCCAGCAAAGCATATGGAATTCCTAGTAGTACTTTGTATAAAATAGCTAGAAGAGAAGGAATAAAATTAGCAGCACCTTTTAATGCAGCACCAACAACGTGGTCTCCAGAAGATTTAGAAAAAGCTTTAGAATCTATTAGATCGGGACAGTCATCAGTTCAAAAGGCTTCCACAGAATTTGGAATTCCTACTGGAACTCTATATGGAAGATGTAAAAGAGAGGGAATTGAATTATCGCGATCAAATCCCACCCCGTGGTCTGAGGATGCAATGGGTGAAGCATTAGAAGCTGTAAGATTAGGACACATGTCGATAAATCAAGCAGCAATTCACTATAACCTTCCTTACTCTTCTCTATATGGAAGATTTAAAAGGGGCATTAAATATGAATCAGAAACGATTGATTCTAATAATTCAGATAGCCAATCTCAGTCAGATCCTCAAGTGCTTGTTATGGATTATCCTAATTCTCACCAACAGATTCAATATCAGCATCATTCGAATAGCTGA
Protein Sequence: MMDMDATHMSGPDHSMESHEDAKRAMHTMMVTPELMGMMPGSSGRLDSSNGDNVHLKSNGHSDHVATRAHGGGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIKLAAPFNAAPTTWSPEDLEKALESIRSGQSSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYESETIDSNNSDSQSQSDPQVLVMDYPNSHQQIQYQHHSNS

Sequence clustering based on sequence similarity using MMseqs2