Istr001628.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Idaea straminata
Gene Symbol
-
Assembly
GCA_951213275.1
Location
OX577846.1:5300395-5305278[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.15 12 7.2 3.4 2 22 175 195 174 195 0.95
2 16 4.1 3.4e+02 2.7 0.4 1 20 295 314 295 317 0.70
3 16 0.88 72 4.8 0.5 2 23 452 473 451 473 0.95
4 16 0.011 0.87 10.8 1.8 3 23 550 570 548 570 0.97
5 16 0.026 2.1 9.6 0.5 1 23 578 600 578 600 0.97
6 16 0.072 5.9 8.2 3.5 1 23 641 663 641 663 0.95
7 16 0.0002 0.016 16.2 4.0 1 23 671 693 671 693 0.99
8 16 0.19 16 6.9 2.1 1 23 775 797 775 797 0.98
9 16 0.42 34 5.8 1.6 1 23 853 875 853 875 0.95
10 16 0.024 2 9.7 0.6 2 23 882 903 881 903 0.97
11 16 0.0037 0.3 12.3 2.1 1 23 970 992 970 992 0.95
12 16 0.011 0.9 10.8 1.1 1 23 998 1020 998 1020 0.96
13 16 0.0056 0.46 11.7 2.6 1 23 1110 1132 1110 1132 0.97
14 16 0.00014 0.011 16.7 1.4 1 23 1138 1160 1138 1160 0.99
15 16 0.66 54 5.2 2.0 1 23 1253 1275 1253 1275 0.96
16 16 0.0025 0.2 12.8 3.7 1 23 1286 1308 1286 1308 0.98

Sequence Information

Coding Sequence
ATGGGCCTCCAAAATCCAGAGAAAGATATAGTTAGCTGCAACAGTGACTCCAATGACGCACCGCCTTCACAAATAAGCAGAGAAGATTCAATATTACCAGGTCAAATGTCACCTAACTCCGGAAATGAAGACAGAAAAAACAGCAGAAGAGCACCTAGACCCATACCACAACTGATACCTTTAAACGCTTCCACACCAAACCAAAACAAATCAGGCGAACCACCagctaaaaaatttaaagaatctACAGACGTAAGTAAATTTGAATCATTGCCAGACGATATTTCTTTAATACCAGTCACTGCTCCAAAAGAAACTGCAGTGCGcaagaaaaataattcatttttcgACAAATTAAAAGAACGGCTTTTAACAGAAACTGGTAAAGAAGGATCACTGAAGTGCAAAAATTGCGGCTTCGAAAGCAAATGTTTGTCGGAACACTCTGTGCACGAAAAAAACTGCACAGCACAATCTAATCGAGTCATGTTGAACACTGCGCTTCCGAGCATGGGCTCTACCCGTTGCCAAAATTGCAGACACAGATGTAAATCTAGCGCCGACCTATATGTACACATGCAAACATGCGGGAAGAATGCGAACGCGACAGTAGAAAAATCTTCTGAAAacaaatatgaaaatagtaatGAGGCTAGCACTTCTAAATTTGAGAAGGAGTCTGAACCGCATCCCATGGAAAATGTAGTATTTGTGTGGAATAACATCGGCCAAGAGTCTAACAAATTCGATAGACCTCTAGACATCAACATCAATGATGACTCTACTCTTCCTGAACATAATAGAAACTATGACATAGAAGCGGTCGATGAAAACGAAGGTATGAACTTGTCGCCGAACAGTTTAAGTCTCGGGAAAAATGTATACAAATGTCCAGATTGCAAATTTTGGGCCGCGACAGCCTCAAGGTTTCACGTGCATATTGTCGGGCATCTAAACAAGAAACCTTTCGAATGTTCACTTTGCAAGTATAAATCTAACTGGCGATGGGACATAACTAAACATATAAAGTTGAAGTCGGCGAGAGATCCGGAACATTACGATGCTAAAGTACTAATGACAGACGAAACAGGTAGAAGAAACTACAGCAAGTACAACAAGTTCTTAGCTGTGCcagttttaaatgaaaatggCGAGAACGAGTTTCACTACATTGATCCTAACACAACGATGGACGCTACCATGGAGATGGATGAGTCGTTCAATGACTCAGGGGACATGACCATGTCTGCCGACATGCAGCCGTTGAATTTGCAGACACAGCCCAACGAGCTCAAATATGATTTAATGGACAACGGAAACCAAGACGTCAAAAAAGCGAAGAAAACTTTATGGAAATGTAAAAAGTGTAACTACAAAGATGCGTCCAAAGAGGCATTGTTGGAGCATGTGAAGCAGCACTCGAGAGGCGAAGGTAGTATAGACGACCCCAGTAAGAAGGCTGAGAACGCAGCCGACCCCGCCGACCTCGCCTACCGCTGCGGCCACTGCAACCAGCTCTCCAACTGGAAACATGTAATACAGAGGCACTGTCGACTGAAGCATGAAGGTATCATAAAGGTAATCACAACGGTCAAACCTAAGGTCGATCCCTCTCAAGCAGCCAATAACGAAGTGTTCACCGACGCTTGCACGAAATGCCCGTTCAAAACGAACGACAAGAGACATCTTGTTGAACACATGCAGCAACATCAACCATCAGCTCAATCCATCTTCAAATGCTACTTCTGTCCTTACTTCGTAAAGGACGAACAAGACTTGATCCAACATCTGCTTCTACACGGTATCACCGATCCTGAAGATTACATTGCTAAAGCGATGGGATGTAGATCACCTTTACCGGATCAAACGGCTATTCTGCCCGAATCAGTTCCACCTACCACCAGCGGTACAACAAAGAGACACAAGTGTACGGACTGTCCGTATGAGACAAACAGCAAATCTCAATACATGTACCACGAACAATTTCACAGACTACCCGCAGATACGCCGTATAAATGTCCCGAATGCAATTACAGCGTCTCCAAAAGGCATTTGCTTCATCAGCACCTCAGAGTTCACGGGATTCATACGAAGAAAAATGAGTCTGAAGCCGAGTTAGAAGCTTCTACATCGTATCACAACAGATCAGAAATCAAGTATGAGGAATTAAAAGATATACCGTACGTGTGGGTTTCAGCAAGAAACGAGTTTCATAAAATGTATAAGTGTCGGTATTGTTCGTACGTGAACTCGCAAAAATGCAAGATTCCTAATCATGAAAAGATACATTGTCTAGCGTTCGAAAACAGCGATGTGATAATTTATAAATGTCTTGAATGTAAATTCACATGTGATAACGCCGGAAGACTAGCTGAACATTCCAAGAGACATGGTTTGTTGTATGGTCGTATTTATAGTAATGTTGAAGATGATATACCAGATGAAGATCAAATAGCAAAATTACGTCGAGTCATCGAATTAGAGAAAGCTACGATACCTGACGATTCAACTAAAGAAGACAACACATCGGATGACGGCAATGAAACCAAAATGAtctatttttgtcaaaaatgtccAGCGAGATACTTTACTGAAAGTGAAATTAAAACGCACGAGAAGTTTCATGATCTAAGTAATCCAAACAAATGTAAACATTGTGAGTTTTCAGTTCCTGAAGAAAGCGATCTAGCGACTCATATCACTATGCATTCCGATGAATACCATATAAGAACTAATATGCTTAACTTTGTTCATAATTCCCATTCACTGTTCAGAGAACCTAGATTAGAATCGATTCGTAATCCGGAAACATCTGAAGTAGCTTGGATAATTTCAACTGTACCCATCAAAATAATCGATCCTGTAGAACCCCACAGCAAGGTAGACACGAAACATTCGTCTAAGCAATATTGTTGCAAAGAATGCCCAGCGAAGTTCTTCAAAAGTTCAGCATTGACATATCATATGGGTTTACATGGTGGAGAAGGCGAccataaatgtaaaaaatgcaGTTATGCGGTTAAGAACGTCGGTAATTTGGCCAAACATGAATTATTGCATGACAATGAGAATAAACAACACAACAATGAATACGAATCTGGAGACGACATGGACTATAAAAATATCCCATTATCGGGAACTGATTTGTTCCAAAGGAAAACAGAAGCCCAGAAGAGAGTACTGACCGATAAAGATAAGTTAGTTAAACCAAACGACCATTTTCCGCCAGTTCTTCAAGCTGATCCGCAGTTCGGTTACCTCATGCATGGTAATCCAGAGTTTATTTACCCGACTTACCTGAAAAATGGTCGTCAAAAAGAAAAACGTTATAAATGCCATAAATGTCCATCAGCTTTTGAAAAGAGAgaacaatacaaaatacatcTATCACTCCATGGTTCTAAACAGAGATACAAATGTGAACTTTGTGATTACTCCGTCAAATATTATGCAAACTACGTCCAACACATGAGAAAGCATCAGATGAACGACGAAGCCCAAGCGGAAAGGAAGAAAAACAACAATGATTTTACAGAACCCGATACTCAAGTAGTAGATAAACAAGACGACAGCGCTGATAATATAAAGTTAGCGATAAAAACGATGCCCAAAGGAACTCCCAAGAGTGATTTTCAACAATTCTCCATTAGAGATCAACAGACGCTAAGGCTACTGCAACGCAGGCGGTCTATGGTCAACGGAACGAAGGAAGCAAACACGTCTGAAACGATCTCACCGGTCAAAGAACGCAAGCTGCACATGTGTTTACTGTgcccctacaccaatcaaagACAGGACGCTCTAAGTAACCATTACAGAAGACACGATGCCCAAGATGTCGTCAACAGTGGTAATCATAAGTGCTCGTATTGTGATCTGGTAGTCGTTCAGTCACATTTCCTCCGCGATCATCTGAAAACACACttcaattatcataaaaatgttACCCCAGAATGTTTCGTGGCAAATGACAATGTTAGTTTTACTATTAAGAGATTAGATGAGGAGTGTGAACCAATTGATCTCAAATTAGAAATGAAAAGCAAAATTGTACCGTGCAATGAcggtaatgaaaaaatatttgtaaaaattaaaacaggtGAACTTGTAGTTGAATAA
Protein Sequence
MGLQNPEKDIVSCNSDSNDAPPSQISREDSILPGQMSPNSGNEDRKNSRRAPRPIPQLIPLNASTPNQNKSGEPPAKKFKESTDVSKFESLPDDISLIPVTAPKETAVRKKNNSFFDKLKERLLTETGKEGSLKCKNCGFESKCLSEHSVHEKNCTAQSNRVMLNTALPSMGSTRCQNCRHRCKSSADLYVHMQTCGKNANATVEKSSENKYENSNEASTSKFEKESEPHPMENVVFVWNNIGQESNKFDRPLDININDDSTLPEHNRNYDIEAVDENEGMNLSPNSLSLGKNVYKCPDCKFWAATASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHYDAKVLMTDETGRRNYSKYNKFLAVPVLNENGENEFHYIDPNTTMDATMEMDESFNDSGDMTMSADMQPLNLQTQPNELKYDLMDNGNQDVKKAKKTLWKCKKCNYKDASKEALLEHVKQHSRGEGSIDDPSKKAENAADPADLAYRCGHCNQLSNWKHVIQRHCRLKHEGIIKVITTVKPKVDPSQAANNEVFTDACTKCPFKTNDKRHLVEHMQQHQPSAQSIFKCYFCPYFVKDEQDLIQHLLLHGITDPEDYIAKAMGCRSPLPDQTAILPESVPPTTSGTTKRHKCTDCPYETNSKSQYMYHEQFHRLPADTPYKCPECNYSVSKRHLLHQHLRVHGIHTKKNESEAELEASTSYHNRSEIKYEELKDIPYVWVSARNEFHKMYKCRYCSYVNSQKCKIPNHEKIHCLAFENSDVIIYKCLECKFTCDNAGRLAEHSKRHGLLYGRIYSNVEDDIPDEDQIAKLRRVIELEKATIPDDSTKEDNTSDDGNETKMIYFCQKCPARYFTESEIKTHEKFHDLSNPNKCKHCEFSVPEESDLATHITMHSDEYHIRTNMLNFVHNSHSLFREPRLESIRNPETSEVAWIISTVPIKIIDPVEPHSKVDTKHSSKQYCCKECPAKFFKSSALTYHMGLHGGEGDHKCKKCSYAVKNVGNLAKHELLHDNENKQHNNEYESGDDMDYKNIPLSGTDLFQRKTEAQKRVLTDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKNNNDFTEPDTQVVDKQDDSADNIKLAIKTMPKGTPKSDFQQFSIRDQQTLRLLQRRRSMVNGTKEANTSETISPVKERKLHMCLLCPYTNQRQDALSNHYRRHDAQDVVNSGNHKCSYCDLVVVQSHFLRDHLKTHFNYHKNVTPECFVANDNVSFTIKRLDEECEPIDLKLEMKSKIVPCNDGNEKIFVKIKTGELVVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00835150;
90% Identity
iTF_00835150;
80% Identity
-