Istr024744.1
Basic Information
- Insect
- Idaea straminata
- Gene Symbol
- -
- Assembly
- GCA_951213275.1
- Location
- OX577875.1:297319-300826[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0035 0.28 12.3 3.7 1 23 183 206 183 206 0.96 2 13 0.00034 0.028 15.5 3.0 1 23 219 242 219 242 0.97 3 13 0.0014 0.11 13.6 2.4 1 23 255 278 255 278 0.96 4 13 0.019 1.6 10.0 1.4 1 23 292 315 292 315 0.97 5 13 1.4 1.1e+02 4.1 3.0 1 23 327 350 327 350 0.95 6 13 0.1 8.5 7.7 2.0 1 23 367 390 367 390 0.96 7 13 0.014 1.2 10.4 1.0 2 23 403 425 402 425 0.96 8 13 0.001 0.083 14.0 1.5 1 23 434 457 434 457 0.97 9 13 0.042 3.4 8.9 0.5 1 23 468 491 468 491 0.97 10 13 0.00056 0.046 14.8 1.3 1 23 503 525 503 525 0.97 11 13 0.0031 0.25 12.5 0.1 1 23 533 555 533 555 0.97 12 13 0.032 2.6 9.3 4.7 1 23 560 582 560 582 0.97 13 13 2.4 2e+02 3.4 1.9 1 21 589 609 589 611 0.94
Sequence Information
- Coding Sequence
- ATGATTTATTTTGCTGAAAATATTAATCACCATGATAACGATTTAGATTTAAACGAACACAACAACAAAAATGAACAGCAAAATGGTGAACATGAACAACAAAATAGTGAAAATGAACAACAAAATGgtgaaaataaacaacaaaatggTGAAAATGAACAGCAAAATTgtgaaaataaacaacaaaattttaaaaatgaacAACAAATTACTGCAATTGAACAACAAAATGGTGCAAATGAAAGACCAAAtaatgaaaacgatgaaaatgaACAACAAATCGGTAAAAATGAACAGCAAAACAGTGAAATTAGTCTCCAAGTAAATGAAAACAGGATATCTGCTGACAAAAACGGTGAAAACGAGGATACAATACCAGTAGAAGTGAAAATAGAGGAAGACACTGCGTTTGACTCATACAGTAATGGAAGCCATGTATTTAGGAAATACAAGTTTCGACAGAGAGACAATAGACCGGACTATTCAAAAACGGAAATCCTACATTTCCCTATAAAAAACTGTACAAGCAACGAACACCAAGATTTATTCAATTGCGACAGTTGCACTCACACATTTAATACTAGAAAAGGACTCCTCAACCATATCCGACAAAAACATGATTTGGCTAATACAAGTTCCGATCCCCAAGATTTATTTAACTGCTACAAATGTACCCAAAAATTCAGTACTCGAAACGGACTCTTCAACCATATTAGAATAAAGCATATTATAGCTAGTACAAGTTCTGAAAACAAAGATGTTTTCGACTGTGATAAATGTACTATAAAATTTAATACTCGAAAAGGATTCATcaatcacattaaaaaaaagcatATTTTTATGGTTAATACACATTCCGAAGATCAAGATTTATTTGACTGCGACAAATGTACTGTACAATTCAATTCTGGAAGAGAATTTCTGAACCATATCAGAAAAAAGCATATGGCTAATACACTATGCGAACAGCAAGATTCGTTTGACTGCGATAAATGTTCTCTAAAATTCAATTCTGGAATAAGATTCCTCAAACATTTCCGAAAAAAGCATATGACGACGAAAAAGCATAAAGTGACAAGTCCCGCACACGAAGGTTCATTTGACTGCGATAAATGTTCTCTAAAATTCAATTCTGGCAAAAGATTCCTCAATCATATCAGAAATACGCATAGGGCTAGTACATGTTCCGAACGCCAAGATTCACTAAACTGCGAGAAATGTACCCTAAAATTTAATACTGGAAAAGGATTTATCAGTCATATCAGAAAAATGCATATGGCTAGTAAAGGTCAAGACTCATTCGATTGTGACAAATGTACTCTAAAATTCAATTCTAGTAAAGGATTCCTCAGTCATATCAGAAAAGTGCATATGGCTAGTACATGTTCTGTGCCAGATTTATTTGACTGCGACAAATGTACTTTACAATTCGATTCTGGACAAGGATTCCTGAATCATATCAGAAAAGTTCATATGACTAATAATACACTTTCTGAGCAAGGTTCATTTGACTGCGATAAATGTACTGAAACATTCAACTCTCGGAAAGGAATGTTAATTCATCTAAGAAAACATATTGTTGACAAGAATATGAAGTACACCTGTGCAATTTGCTCCGAAGAGTTCGATAAGAACAATGAATTGATCGAACACAAAATAATACATAAGGATATGATGTTTTCATGTGAGAAATGTCAACTAGCTTTCACAGATCACTGCGAGTTCCTCaaacatgaaataaaacatGATAAGTTGAAATCATTGTACAAATGTATCGAATGCGAAAATTACTATGATAGTAAAACAGCACTGCAAGTACACTTACGATGTCACTTTGACCGAATGGTTGAATGTAAAATTTGCCACGTTATGATTAAAGAACGTAACATGAAAAGCCACTTATCGGATCATAATTTGGTGAAATGTGTCGAGTGTGAACGACTGATGCGTCCAAGTTTGATGTCTTACCACATGCATGCACCAAACACGTCGGAGCTCCTCAAAGCCAGCAGGTCGTGCCCTGAGATTAGGCTTGAAGATATCTTCTTCAGTGTTTCTTCGTTAACTCTCATTCCGATGCCCAGACTTCCTGAAAGTTATGGGCTGGTTCAGAGTCGTAGAACTCAGCGCTGGAGAGTGACGGGACTTTTTTAA
- Protein Sequence
- MIYFAENINHHDNDLDLNEHNNKNEQQNGEHEQQNSENEQQNGENKQQNGENEQQNCENKQQNFKNEQQITAIEQQNGANERPNNENDENEQQIGKNEQQNSEISLQVNENRISADKNGENEDTIPVEVKIEEDTAFDSYSNGSHVFRKYKFRQRDNRPDYSKTEILHFPIKNCTSNEHQDLFNCDSCTHTFNTRKGLLNHIRQKHDLANTSSDPQDLFNCYKCTQKFSTRNGLFNHIRIKHIIASTSSENKDVFDCDKCTIKFNTRKGFINHIKKKHIFMVNTHSEDQDLFDCDKCTVQFNSGREFLNHIRKKHMANTLCEQQDSFDCDKCSLKFNSGIRFLKHFRKKHMTTKKHKVTSPAHEGSFDCDKCSLKFNSGKRFLNHIRNTHRASTCSERQDSLNCEKCTLKFNTGKGFISHIRKMHMASKGQDSFDCDKCTLKFNSSKGFLSHIRKVHMASTCSVPDLFDCDKCTLQFDSGQGFLNHIRKVHMTNNTLSEQGSFDCDKCTETFNSRKGMLIHLRKHIVDKNMKYTCAICSEEFDKNNELIEHKIIHKDMMFSCEKCQLAFTDHCEFLKHEIKHDKLKSLYKCIECENYYDSKTALQVHLRCHFDRMVECKICHVMIKERNMKSHLSDHNLVKCVECERLMRPSLMSYHMHAPNTSELLKASRSCPEIRLEDIFFSVSSLTLIPMPRLPESYGLVQSRRTQRWRVTGLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -