Istr024902.1
Basic Information
- Insect
- Idaea straminata
- Gene Symbol
- -
- Assembly
- GCA_951213275.1
- Location
- OX577875.1:2453009-2455276[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.4 1.1e+02 4.2 1.9 1 23 84 107 84 107 0.92 2 9 0.0083 0.68 11.1 1.8 1 23 133 156 133 156 0.98 3 9 0.0032 0.27 12.4 1.1 2 23 179 200 178 200 0.97 4 9 0.04 3.3 9.0 0.1 1 21 204 224 204 227 0.89 5 9 0.21 17 6.7 0.5 1 12 232 243 232 254 0.84 6 9 0.0094 0.77 11.0 0.6 2 23 261 283 260 283 0.86 7 9 0.00018 0.015 16.4 1.0 2 23 290 312 289 312 0.97 8 9 0.00077 0.063 14.4 2.2 1 23 318 340 318 340 0.98 9 9 4.2e-06 0.00034 21.5 2.9 1 23 346 369 346 370 0.97
Sequence Information
- Coding Sequence
- ATGACCATCACGCAATGGGTGCCGATAGACGGCAAAGGTCTGTCTGACGGCTGTGTCGTTCAAGCGAAACCAACTGACAAGATTGCTCCCAAATATGAAACCGAAACCGCTATGAATGTCATTCCAATTGTCTTTGAACCGACCCGGTATACCAacaataaaaaagatttaaagGAAACAAGACATAATTCTCTACAAATACTGAGATACTCTAACTCTACCCCGATAAGAGCGTTTAAGGGATTCGAATACTATTGCGTGTATTGTGATTTCAAGCATCCTTTGCCGAGTAAACTCAAGACACATACTCTTGAGTCGCATGCAGACATCAAAGTGTCTTACATCGAAGGGTTTTTCGTCAGGACTAGTACCTTATTGAAATTCGACCTGACTAACTTTAAATGTAACCTCTGTGACATGAATATCAATACAATAGAACATTTCCTAgaacatataaaaacaaaacacgataaaGATGTTTACAGCGACgccaaaaatcaaatattaccGTTCAAATTTGAAACCGAAGAACTGACATGCTTTATGTGCAACAAGATTTTTgggaaattcaaatatttacttGAACATGTCAACACACACTACAGTAACTTCATTTGTACTATCTGTAGCGCGGGATTCGTGACCATACTACAGCTTCGCAATCACGTCTTTGATTTGCATAGAACTGGCTCATTCCCCTGTCCGTATTGCCCTAAAGTCTTAAACACAGAACGGAAAAGGGGCTTTCATGTTAAAAGACATAATAAAGTGAAGACCTTGAAATGCTGGTATTGTGATGAAAAATTCACTAGTCAATCGATAAAAGAAAGGCATTTGATAGAAAAACATGGACAAGCTATTGACACGACTTGTAAAATTTGCAACAATGTATATCCGCATCGTAGAGGCTTACAAATTCATATAAGGCGGGTACATCTATATGAACGTCGATTTAAGTGTAACAGTTGTGAAATGTCGTTTTTCACTCGCTGGGAACTGCAAGATCATAGCAAGAAGCACTCGGACGTAAAAGTATTTGAGTGTAATtcgtgtaataaaatatttgccaGGAAACCAAGCCTGAAGCTGCATATGAGGAAAACTCATCATGAATAA
- Protein Sequence
- MTITQWVPIDGKGLSDGCVVQAKPTDKIAPKYETETAMNVIPIVFEPTRYTNNKKDLKETRHNSLQILRYSNSTPIRAFKGFEYYCVYCDFKHPLPSKLKTHTLESHADIKVSYIEGFFVRTSTLLKFDLTNFKCNLCDMNINTIEHFLEHIKTKHDKDVYSDAKNQILPFKFETEELTCFMCNKIFGKFKYLLEHVNTHYSNFICTICSAGFVTILQLRNHVFDLHRTGSFPCPYCPKVLNTERKRGFHVKRHNKVKTLKCWYCDEKFTSQSIKERHLIEKHGQAIDTTCKICNNVYPHRRGLQIHIRRVHLYERRFKCNSCEMSFFTRWELQDHSKKHSDVKVFECNSCNKIFARKPSLKLHMRKTHHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00837996;
- 90% Identity
- -
- 80% Identity
- -