Istr011944.1
Basic Information
- Insect
- Idaea straminata
- Gene Symbol
- -
- Assembly
- GCA_951213275.1
- Location
- OX577857.1:2865226-2868077[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.031 2.6 9.3 1.3 2 23 37 58 36 58 0.95 2 13 0.00042 0.034 15.2 2.7 1 23 96 119 96 119 0.93 3 13 1.6 1.3e+02 3.9 2.4 1 23 121 143 121 143 0.91 4 13 0.0028 0.23 12.6 0.0 1 23 180 202 180 202 0.98 5 13 9.1 7.4e+02 1.6 4.4 3 23 231 252 230 252 0.89 6 13 0.86 70 4.8 7.4 1 19 259 277 259 281 0.91 7 13 0.00043 0.035 15.2 0.2 1 23 287 310 287 310 0.91 8 13 0.00058 0.047 14.8 2.1 1 23 319 342 319 342 0.96 9 13 0.0006 0.049 14.7 0.1 2 23 348 371 347 371 0.96 10 13 0.054 4.4 8.6 0.1 1 20 404 423 404 426 0.93 11 13 0.0034 0.28 12.4 0.9 1 23 432 454 432 454 0.98 12 13 5.6e-05 0.0046 18.0 2.7 1 23 460 482 460 482 0.98 13 13 0.00041 0.034 15.2 0.5 1 23 488 511 488 511 0.94
Sequence Information
- Coding Sequence
- ATGGCTTCAACCATAGCTCCACAAACACTTCTGGAAAGCAGCCCGGGAGGGCCGCTCGCTCCCATATACCTGCCTAAACTGACCGCTATTGATAAAATCGGAGGAATTTACTGTCATCAGTGTGATTCAGtatttggaaataaaaaagaatttgaTGCTCATTATTCACAACACATTGCCGGACGTGGCGATATTATATACACTTGTATCATATGCAAGAAGCAGATAACCAGCTATCCTAGCTTCCGTGGACACTGCTATCTCAACCATGTCGTCAGAAACAAATTCCAATGTCAACATTGCTCAAAGTGTTTTTCAAAGCAGTCAGTCCTTGCAGGCCATATTTCTGCTGTACATGAATTTAAATGTTCTGCATGTGATGCCAAattCTCCGCAAAAAAGGAGTTGGAGTGCCACAAGTATATTCACAAAAGCAAGGCAACAGATGAACCCCCATATGCTTGTTTCACTTGTGGGGACGAGTTGAATACTCTCGATCTCTGCGAGACTCATATAGATGATCATTGTGAGATGCTCTATCCTTGCCCCATATGCAACGAGGTCCTCGTTAATAAAATCGATGCAACCAAACATTTGACTAAACATTACGATGAAATTCCGGAAGATAACATTATAGTAACATCAGATAATTGTGAAGATAGCTCAATAGATGTACTCGGGGGTATTCTTTGCTGCCATTGCGATATATTGTTCAAGAATAGAACAGAATTTGACAGTCATTTTACATTGGACCATGAAGATAAATCAATTATTTACACTTGCCACATATGTGGAAAACACTATGAGAAGTATTCTTTGTTTGGCAACCATTGCTACTTCCACATAACCAAAGATAAATTCCAATGCGACCAATGTGAGCGTGCATTCCCACGGCTGTCCCTGCTGGTGACACACACAGACGCGTTCCACAGCGACGGCGCGCTCGACAAGCCATACCGCTGCGAGAAGTGTGGACACGGGTTCAAGGCTCGCTACCGTCTCTTCAACCACATGAAGGCTGCGCACAATGAGATCTGTATTAAATGCCCCCTGCCCGGCTGCAACACTGGGTTTGATAGTCCAAAAGATCTATCCGTACACCTGAAGAAGCACAAGGCTCGACTAGAGCGGTGGTGCAGGTCGTGCGGACTGCAGCTGGGCTCACTGGGCGCGGCGTCGCGACACCTGGACGTGCACCGTCGCAAGCGGTACGCGTGCCCCGTGTGCACGCGCAGCTACGCAGAGAAGTACCTCATCATGAAGCACGTGCCGCAACACTTCGCGGCGACGATCCACACATGTCGAGTGTGCGGACGTGCGTACCCAGCACGCAACCGCCTCATCCAGCATCTCAAGACACACTCCGACTCCCGCCCCCACAAGTGCACCTTCTGCCCAAAGTCGTTTGTGCTCTCGAACCAGCTGAAGCAGCACCTGAACGTGCACAGCGCGCAGCGTCCCTACGAGTGCGTCGCCTGCTCCAAGACATTCTCCTACCCCTCCAACTGGGCGAAGCACCTCATCCACGTCCATAAGTTCGACAAGTCTCGCCTGAAGGCCATCCGGGCGGCACGTAGTCAGAATATTTCCCTAGCCAACACTTCCACCAATGTCAAGGAGGAGCAGTCGGGCAGCGAGTCGGAAAGCTCCATCGAGATGTACAAGGTAGAGGAGTCTGACGACGAAACCCCCGAGCGCAAGGCACCCGCGCCATCCGCACCCGAGACATACAATTACGGTATGGAGGAAATGAGCGCTCCACTCACTGGGAAACTCATGTCCATACCGGACCCCGTGAAAGCGATGATCGATCAATACATCGCACCTGTAATACCCAAGAATGAATTAAACGAAATTAAAAGCGAATACTTTACGGTTACGAAGGCCGACGACTTGAGCGACATAAAGTCGATCGTAGAGGACATCGACGCTATGAGCGGTGAACTCGACGTCCCGACACGTGACGATGCTGTGCTACCCTCTGACATCATGCAATTCGCTGAGATTCCGGTAGCCAATGCTAATATCACCGTTTTCAATCCAGAGGAGCCTCAGTTGCTGACATCGCTTCCGCCCGCATGTCCTCTCGAGTACGGTCCGGATTTTACACTTCCGGATCCTGACTCGTGCAGCACCGGATTCATCGACTTGGACGACCACAACCTCCCGCACATCGACCCGCTGCTCACCATAAAGGAGGTAAAGCCCCCCTCCTATGCGCCAGGTAACTACCCCTATCACGAACCTACAATTCTCTACCAACAACAGAACTGGGAGCCCCTTATCACGAAAATTTGCACCTACGATGAATGCAATGACGCCAATAGAATGTTTATTGTCAATAGCAATATATTTTAG
- Protein Sequence
- MASTIAPQTLLESSPGGPLAPIYLPKLTAIDKIGGIYCHQCDSVFGNKKEFDAHYSQHIAGRGDIIYTCIICKKQITSYPSFRGHCYLNHVVRNKFQCQHCSKCFSKQSVLAGHISAVHEFKCSACDAKFSAKKELECHKYIHKSKATDEPPYACFTCGDELNTLDLCETHIDDHCEMLYPCPICNEVLVNKIDATKHLTKHYDEIPEDNIIVTSDNCEDSSIDVLGGILCCHCDILFKNRTEFDSHFTLDHEDKSIIYTCHICGKHYEKYSLFGNHCYFHITKDKFQCDQCERAFPRLSLLVTHTDAFHSDGALDKPYRCEKCGHGFKARYRLFNHMKAAHNEICIKCPLPGCNTGFDSPKDLSVHLKKHKARLERWCRSCGLQLGSLGAASRHLDVHRRKRYACPVCTRSYAEKYLIMKHVPQHFAATIHTCRVCGRAYPARNRLIQHLKTHSDSRPHKCTFCPKSFVLSNQLKQHLNVHSAQRPYECVACSKTFSYPSNWAKHLIHVHKFDKSRLKAIRAARSQNISLANTSTNVKEEQSGSESESSIEMYKVEESDDETPERKAPAPSAPETYNYGMEEMSAPLTGKLMSIPDPVKAMIDQYIAPVIPKNELNEIKSEYFTVTKADDLSDIKSIVEDIDAMSGELDVPTRDDAVLPSDIMQFAEIPVANANITVFNPEEPQLLTSLPPACPLEYGPDFTLPDPDSCSTGFIDLDDHNLPHIDPLLTIKEVKPPSYAPGNYPYHEPTILYQQQNWEPLITKICTYDECNDANRMFIVNSNIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00835007;
- 90% Identity
- iTF_00835007;
- 80% Identity
- -