Istr008626.1
Basic Information
- Insect
- Idaea straminata
- Gene Symbol
- -
- Assembly
- GCA_951213275.1
- Location
- OX577853.1:6194193-6205067[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00041 0.034 15.2 0.2 2 23 140 161 139 161 0.93 2 10 0.0006 0.049 14.7 2.4 1 23 167 189 167 189 0.96 3 10 4.2e-05 0.0034 18.4 0.3 1 23 284 306 284 306 0.98 4 10 0.00052 0.043 14.9 0.0 3 23 395 416 393 416 0.90 5 10 0.017 1.4 10.2 0.5 1 23 437 459 437 459 0.92 6 10 9.8e-06 0.0008 20.4 0.2 1 23 485 507 485 507 0.98 7 10 0.00064 0.052 14.6 0.2 1 23 513 535 513 535 0.97 8 10 0.00036 0.03 15.4 0.3 1 23 541 563 541 564 0.95 9 10 0.048 3.9 8.8 0.5 1 23 577 599 577 599 0.96 10 10 0.01 0.86 10.8 0.0 1 20 737 756 737 759 0.93
Sequence Information
- Coding Sequence
- ATGGATGGAAACAGAGAATATGTCTTGCCCATACAATGGGATGAAGTAATGGAGCCTAAGCATACAAATAATGTGACCACTGAAGAAGTGATATGCGGGTTAGATAATGCAACATATTCAAATATGACATCAGATGAAATAATAGCAAGTACGGATCAAATGGCAGCTGAGAACCTGATGTTCCTCGCACAAGATGTGGTGGGGTATACTGAGACAGCTGAGCTGGCAGAAGACCCGAGTGTGGAGTGTGTCACTGAGGAGGTCATCACTGATGATTGGGTCCTCAGTGGGGGACAGGAACGtgtGGAGGTGCCAATGGAACATTTAACGCAACCAGTGTTAGATCTTAAAGAGGAGAATGATGTTGATGTACCCTTGCCTACAGATCAAGATGAGTACACAGCAATGCGACCGTGGCCCTGCGACTTCTGCTCACGCCGGTTCCGCAAGAAGGCGGCGCTTATGAATCACATGGTGGCGCATCAGAACGACAGACCTCACGCGTGTAATCTATGCGGTGTGAGATACGTGAGGAAATGCGACCTTATGAACCATCTTAAGGTGCACGCGTTTGTGCCTGACAACTCCGACTCTATGGATATTGAACAAATGTTAGACCATAACCAAATATTAAAACCAAAGAAGAAACGCGGCCGACGGAAAAAGATACCTGAACCTGAAGAGGATTCGTGGGAGAACATGCGATCAGCTCGCACTATGCAATGGTCACGTCGCGGACGCTCGCCCATTAAGGCGGAGCCTCCGGAGCCCCCCATGTCGCCACCCTCGCCGCCGTCACCTCCGTCAGAGCCTGAACCCCCGCCCCCGCCAGCAGACCCCTCACGACCGTTTGTCTGCAGACATTGCGGTATCGGCTTCGCTAGAGAAAAGGCTCTACAATCACATGCAAGGGTTCACGGTGGCGATTCACCAATCGAATGCCGGGAATGCGGTGAGCTCTGTTGGTCGCGGGAAGCGTTGGTTAATCACGCCGCTCAACGGCATCCACATTTGCCGCCTTCAGTCGACAATGAAAACGCTTATGAATCTGACTCCGGCGACGACATTGAATACCGTCTGTCCCCGGAGTCTCACCCGAGcggaggcggcggcggtggcggtAGCGGCGGCGGAGGTGGCGAGCGTGCAGTATACGACACGATGCGAGGCCCTGAACTGTTCTGTTCCGACTGTGGAGTCGCCTTCCAAAGGGCAGACCTGCTGCGGAGACATGTTGCTGCTGCTCATAGTTACAAGCGCGGCGGTGTGGGCGGTGCGGGCAGTGGCGCTGGCTCCGGTGCGGGCGAGCACGCGTGCGACGTGTGCGGCGCGACCTGTACGGACGCGCTGCACCTGCTCGCGCACGCGGAGGGACACGCCGAGCGCGCGCCCAGgttAAAAAGATCATCGAAAGGTCGGATTAATACGTCTCCATCGAGTGGTTCACGACAATTCCCATGTAGGGAGTGTGGTAAAGTTTTCGGTTCGCGGAGTTCACAGCAGATTCACATTCGTATCCACACTGGCGAGCGACCGTACGCCTGCAGGTTCTGTTGGAAGGCTTTCGCGGATGGTGGCACTTTGAGGAAACATGAACGGATACATACTgGTGAAAAGCCATATGCATGCGCGGTGTGTCCGCGCGCGTTCAACCAACGAGTCGTTTTACGTGAACATGTACGATCACATCATTCCGCACCGGATAGAAAAGCCAATGGTACTGTAGTTTACAATTGTTTTGTATGCAGTCGGGTACTGCACTCAAGCGCGGAATTAGTACAGCATTTGATACAACACTGTGACGCTAATACTGCCATGAAAAGGCAACCTAAGTCTGGTCCACGGAAATACAAGCGTCGTCGGAAGATAAAGAATGAAGTGTTATCAATGGCACGATCGTGGAGCGGTTCACCTATAGCTCGGTCGCCGAGTCCAGAGCCCGAGGCTGAAGTAATGCGTAGCCCGTCGCCGGTGTCCCCACCTCGTCGACGCCGTCGCAAGGAGCCCCTGCCACCGCCCCGTCCTGGACCGAAGATGATACACACTGAGCATCCTAGACCTAGGACTAAACAAGTCACTGTACGTCAACGTCGTCCGCCGCGTCACCCGGCCGACGATCTCCGTGCCATCGGTCCGCAGCCACCCTCACCGAAACGAGAGATGCTATCCCCCGAGCCAGAGCAAGAGGAACCAGACGAAGGTGGCCCGTACACTTGTGAAATGTGCTCATTGGAGTTTCCACGGAGAGATGCCTTGTTGTTGCATGTACCCGTACATATATGA
- Protein Sequence
- MDGNREYVLPIQWDEVMEPKHTNNVTTEEVICGLDNATYSNMTSDEIIASTDQMAAENLMFLAQDVVGYTETAELAEDPSVECVTEEVITDDWVLSGGQERVEVPMEHLTQPVLDLKEENDVDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAFVPDNSDSMDIEQMLDHNQILKPKKKRGRRKKIPEPEEDSWENMRSARTMQWSRRGRSPIKAEPPEPPMSPPSPPSPPSEPEPPPPPADPSRPFVCRHCGIGFAREKALQSHARVHGGDSPIECRECGELCWSREALVNHAAQRHPHLPPSVDNENAYESDSGDDIEYRLSPESHPSGGGGGGGSGGGGGERAVYDTMRGPELFCSDCGVAFQRADLLRRHVAAAHSYKRGGVGGAGSGAGSGAGEHACDVCGATCTDALHLLAHAEGHAERAPRLKRSSKGRINTSPSSGSRQFPCRECGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRKANGTVVYNCFVCSRVLHSSAELVQHLIQHCDANTAMKRQPKSGPRKYKRRRKIKNEVLSMARSWSGSPIARSPSPEPEAEVMRSPSPVSPPRRRRRKEPLPPPRPGPKMIHTEHPRPRTKQVTVRQRRPPRHPADDLRAIGPQPPSPKREMLSPEPEQEEPDEGGPYTCEMCSLEFPRRDALLLHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -