Istr019892.2
Basic Information
- Insect
- Idaea straminata
- Gene Symbol
- -
- Assembly
- GCA_951213275.1
- Location
- OX577866.1:9511852-9518128[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0029 0.24 12.6 2.9 2 22 221 241 220 241 0.93 2 19 1.2 98 4.3 0.4 3 23 274 295 273 295 0.94 3 19 0.00012 0.01 16.9 0.6 1 23 300 322 300 322 0.96 4 19 0.39 32 5.9 0.6 2 20 326 344 325 346 0.92 5 19 0.00093 0.076 14.1 2.8 1 23 358 381 358 381 0.95 6 19 0.00048 0.039 15.0 1.1 1 23 387 409 387 409 0.98 7 19 0.00047 0.038 15.1 0.3 2 23 417 438 416 438 0.97 8 19 0.3 25 6.2 1.4 1 23 444 467 444 467 0.89 9 19 0.0059 0.48 11.6 0.4 3 23 477 498 476 498 0.96 10 19 1.8e-05 0.0014 19.6 0.2 3 21 614 632 612 633 0.94 11 19 3.4 2.8e+02 2.9 0.0 3 23 640 661 638 661 0.93 12 19 0.0055 0.45 11.7 1.3 1 23 666 689 666 689 0.92 13 19 1.1e-06 8.9e-05 23.4 1.4 1 23 694 716 694 716 0.98 14 19 0.066 5.4 8.3 2.9 2 20 720 738 720 740 0.93 15 19 4e-05 0.0032 18.4 0.3 1 23 766 789 766 789 0.95 16 19 0.001 0.084 14.0 0.4 1 23 795 817 795 817 0.92 17 19 0.078 6.4 8.1 0.1 1 23 823 845 823 845 0.97 18 19 0.0053 0.43 11.8 0.5 1 23 851 874 851 874 0.94 19 19 7.4e-05 0.006 17.6 0.2 2 23 881 903 880 903 0.95
Sequence Information
- Coding Sequence
- ATGACCCGGCAAGTAGACATCAAGGCTTTAGTGTCGCATATCGTAAAAGGAGACGGTATGGACAAATGCCGAATATGTATGGGGGACACATCACAAGGGCAAGTGCACCTCGGTGACACTGTGATGATGGATGGAGACAAGCCTGTAAATCTCTCTGAGTTACTAGAAACGATCACAGGAGTTCAGGTGGAGTTGGAAGCGACCTTACCCTCAACAGTATGTCTAACTTGCCACCTGTCCGCTTACGAGGCTGCCCAGTTCCGATCTCTGGTCCAGAGAGCCAACGAACAATGGAACACTACCCTGCAGCTCTTAGAACACCTACCTGACCACCAGTACTCTAATAACGACAGATTAACTGCTGTAGAGGAGGAGAAGGACCTCCCGCCGGGCCTGTGCCGCGCATGCTTCGAAGACGTCACCAACGCAGTTAATTTCAAGCATCTCTGCGAAAAGTCCGCCTCACAGTGGGGAAACGCCATCAATTACCTCTCAGAAATACCCGAAACTAATCAGTTATCAAAAGATTTTATAGTAATTTGTCGCGAAAAAGAATTCCAACGAGAAATTGACGATAATTTGTCTACAGAATTCGTATTTTCTGATTTAGAAGATACAACTCCACAGAAAGAAACACGCCAAAAACAGCAATTTTCATGCAAGTGTCCGTTTTGTTCCAGAAAGTTCTCTATTGCTAAAAATCTGAACAACCATTTGAAGAAGACAATGAAACGGTGTTGTAGACTTTGTGGGATTATAATTAACAAGAATAAATTAGCTAAACACCTTAACGAACAACATAATGAAGACGTAGTTGATTGTAAAACTTGTTTTGAACTGTTCGACATGCCCGAAGATCTTAGTGTACACCGGTTTAAATACCATGGGGCTGAATCTTTCACTTGCAAATTTTGTGGACAAGGTTTCACGAATTTGAGAGCGCTAAGAGCCCATGAATTGTACCATTCTTTGCTTTACTGCTCAGCTTGCGGAATATCTTATGAAAACAATGCTTGTTTTCAGTACCACCAAACATCACAGTGCAAATCGAAAAAGACTTCTTTTGATTCATTCGAATGTCACCATTGTGGTTTGAAATACGATAAGAAACCATCTTTACGTATACATATTATACAgaaacatttaaatatattgcCTTTTGTCTGTCAGACTTGTGGCAAACGGGCTTCCACGCTTCCTCATTTGAAATCCCACGAACTAACGCATAAGAAAGAACGGAAGACTTGGCAATGTTACGACTGCGGTAGTAGTTTTAGGACGGAGTTAGGATATCGCCTCCACATGAGAATTCATAGCGGTATAAGACCTTATAAGTGTGAGCTATGTAACGAGAGTTTTCTTTCTTCATCCAGAAGGTCAGACCATGTTAAAAGAAGGCATAAAAGTACTAGAGATATGCCTCATGGATGTAAAAGATGTACAGCGAAGTTTATAAGACCCTGGGAATTGAAAAAACATTACTTAAACGTCCATAGTTCTGTTGTAGAAATTGTCGATGAAACCCTTTGTCCTCCCGGTGTCTGCGTGTCATGCACAAGTGCAGCTCTTTCAGCcataaaatttcgtttatttgtaAAATCTTCCGAAAGCTTCTGGTACAAAGCTATCAAGAATTTCGCGTGCATAGATTTAGAGGAATTGGATGGGAACATCTTGAAATCTTTATGCGTATTTGTATCGGACAATGATTTATCGTTGGAATTAGCAAGAGATTTCACCGGTGGCGAACCAAACATAGTAGTCAATCGGACTAAGGTAAGAACAGTTAAAAAGACTGGAAGAAAACCTAGATGTCCCAGAACGGGTCCTTCGACCATTTGCCCGGATTGTAAGAAATCATTTTCCAGCCCGGCTATGTTACATGCTCATCTAAGGAACAGCGACCAAAAAGACGCGTGTCTGACTTGCGGAGCTGTAATTGCTAGAGGTCTcgaaatgaaaaaccacatggAAACAATTCATAATGATAAGACATTCTTATGCAGACATTGTCCAACAATTTTTAACTCTGAAGATGACTTCAATAAACACGAGAAAGAAGCCCACAAACTAGGTTCTTACACATGCACTCAATGTGGGCGGACATTCCCCAGAAAATCGTCTTTCGAATCTCATGTGCAAATGCATTTAGTACGCACTTGTCGTAAATGTGGCGTCCAATTCACCAACCGCAGTTGTTACAGAGAACATAGGTCGCAATGCGAACCCGAAGCTAAACCAAACATGAAAGGTTTAGCGCGAAGTCGACGCTCAAATATCCGTGATCCAGCTACTTATATCTGCGATTACTGTCAAAAGAAATACGCAACCAGACCTCAATTGAAGAATCACATTCTCTGGATCCATATGGACGTTCGACCGCATCAATGTCAATGGTGCGGTAAACGGTTCTATACTCCAGCTAGATTGGCGGAACATAGTGTTGTCCATACTAGAGCGAGAAACTTTGAATGTGACATTTGTGGTGCTAAATTAGTTTCCAAAATGGCTGCCGTGTATCACAGGAGGCGACATACGGGAGAGAAGCCTTTTACTTGCGAGGATTGTGGAGCAACCTTTATTTCTTCATCGAGAAGATTAGAACATGCTAAGCGAAAGCATAATAAAGGTGTTAGAATTCAATGTCAAAGTTGTCCGGCTAGTTTTGTTAGAAAAAGTGAACTcaaaaaacatgttgaaaagGCTCATAGTAATCATAACGTTGATTGTATTACTTAG
- Protein Sequence
- MTRQVDIKALVSHIVKGDGMDKCRICMGDTSQGQVHLGDTVMMDGDKPVNLSELLETITGVQVELEATLPSTVCLTCHLSAYEAAQFRSLVQRANEQWNTTLQLLEHLPDHQYSNNDRLTAVEEEKDLPPGLCRACFEDVTNAVNFKHLCEKSASQWGNAINYLSEIPETNQLSKDFIVICREKEFQREIDDNLSTEFVFSDLEDTTPQKETRQKQQFSCKCPFCSRKFSIAKNLNNHLKKTMKRCCRLCGIIINKNKLAKHLNEQHNEDVVDCKTCFELFDMPEDLSVHRFKYHGAESFTCKFCGQGFTNLRALRAHELYHSLLYCSACGISYENNACFQYHQTSQCKSKKTSFDSFECHHCGLKYDKKPSLRIHIIQKHLNILPFVCQTCGKRASTLPHLKSHELTHKKERKTWQCYDCGSSFRTELGYRLHMRIHSGIRPYKCELCNESFLSSSRRSDHVKRRHKSTRDMPHGCKRCTAKFIRPWELKKHYLNVHSSVVEIVDETLCPPGVCVSCTSAALSAIKFRLFVKSSESFWYKAIKNFACIDLEELDGNILKSLCVFVSDNDLSLELARDFTGGEPNIVVNRTKVRTVKKTGRKPRCPRTGPSTICPDCKKSFSSPAMLHAHLRNSDQKDACLTCGAVIARGLEMKNHMETIHNDKTFLCRHCPTIFNSEDDFNKHEKEAHKLGSYTCTQCGRTFPRKSSFESHVQMHLVRTCRKCGVQFTNRSCYREHRSQCEPEAKPNMKGLARSRRSNIRDPATYICDYCQKKYATRPQLKNHILWIHMDVRPHQCQWCGKRFYTPARLAEHSVVHTRARNFECDICGAKLVSKMAAVYHRRRHTGEKPFTCEDCGATFISSSRRLEHAKRKHNKGVRIQCQSCPASFVRKSELKKHVEKAHSNHNVDCIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -