Basic Information

Insect: Idaea dimidiata
Gene Symbol: ush
Assembly: GCA_949358125.1
Location: OX442337.1:16357683-16363207[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0046 0.38 12.0 0.2 1 20 138 157 138 159 0.95

2 9 0.00026 0.021 16.0 0.5 1 23 197 219 197 219 0.98

3 9 0.087 7 8.0 0.6 3 20 255 272 254 274 0.92

4 9 0.027 2.2 9.6 2.4 2 21 505 524 504 525 0.95

5 9 0.0077 0.62 11.3 0.2 3 20 550 567 548 569 0.91

6 9 4.8 3.9e+02 2.5 0.0 2 23 598 619 597 619 0.93

7 9 0.0098 0.8 11.0 1.3 1 23 625 647 625 647 0.99

8 9 0.26 21 6.6 1.0 1 23 693 716 693 716 0.96

9 9 0.14 11 7.4 0.4 2 20 753 771 753 773 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0046	0.38	12.0	0.2	1	20	138	157	138	159	0.95
2	9	0.00026	0.021	16.0	0.5	1	23	197	219	197	219	0.98
3	9	0.087	7	8.0	0.6	3	20	255	272	254	274	0.92
4	9	0.027	2.2	9.6	2.4	2	21	505	524	504	525	0.95
5	9	0.0077	0.62	11.3	0.2	3	20	550	567	548	569	0.91
6	9	4.8	3.9e+02	2.5	0.0	2	23	598	619	597	619	0.93
7	9	0.0098	0.8	11.0	1.3	1	23	625	647	625	647	0.99
8	9	0.26	21	6.6	1.0	1	23	693	716	693	716	0.96
9	9	0.14	11	7.4	0.4	2	20	753	771	753	773	0.92

Sequence Information

Coding Sequence: ATGTGTAAAGCAGATTGTCAGAGTGTAAGGCGCACGCATCGCGCCCACGTCTCCGCTATATCGCATCGGATATgCGAGGACGAGGAATGGGGCAACGAGAACGAGGCGATGCCGACCGAACCTCGCACGCCGAGTTCCGCGGGATCGAGCGGCGGCGCGACGCCGGAGTCGCGAGGGACGAGTCCCGCCGGCGCGCCGCCCGCACCCGACCCGCCCCGCCTGCGACTCAACCCAAGCCTGGCGACTGACCCCGCGCTGGCGCCGCGCGCCACCCCCCTCAAGCGGGAACCACGCTCCCCCTCCCCGCCGGCCACCCCCGCCCCCGCACCCGTCCCGCCAGCCACGGCGCGGGACTATCTCGCCGCCGCCGCAGCCGCCTTCCCAGGTCTCTTCCCGACCGCAGCGCCCGGCTACGTGTGCAAGCCGTGCGGCATCCGGTACTCTTCCCTGAGCACGTTGCAGGCGCACCAGGAGCACTACTGCTCCAACCGGCGCCCCAAGCCGGCCGAGCCTGGCGACTCCCCGACGGACGCCGCCGGCGACGACTCCAGCGGCGACTCGAAGACGCCGCGCCCAGCCGGGAAACAATACGCGTGTGCATACTGTTCCTACAGCGCTGACAAGAAAGTCAGCTTAAATCGCCACATGCGGATGCACTCGTCATCGCCCAGCGGCGGTGCGACTACACCGGCCCCCGCTGCCGTCTCGGCGCCACCTTCTAACGGCGACGCGAGTGAGGGTCCGCCAGCACCGGACCGGTACTGCGCCGACTGTGACATCCGCTTCAGCTCGGTGAAGACGTACCGCGCGCACAAGACGCACTACTGCAGCACGCGGCAGGTGGTCAAGGGAGCGACGGTGGGACGCGCCTCGTCCGCCACGTCCGGGTCGGCGCCGCCATCTCCTGGCGCGACGCCGCCAGCCGCGCCGCCTCCTCAATACGCGCTCGCGTTGCCGACGACACCGATCTTGATCCTACCCATCGGTCTCCTCCGGGCTGCGAGCACGCTCCCGGGCGCGACATTGCCTGATCCAGACGCACCCTGCTTTCTGCTTCCAAATGGCACGTTCCAGCCGCTGTCGCAGGCGCTGCCTCCGTCAGTCGTCGACTCTAAGCCGACCGAGGCTGATGTGTTGAAGGCGGCAAATCGTCGAGACCGAGAATCCGGTGGGGGAGGCACGCCGCTCGATCTAAGCGTGCGTCGGTCGCCACCCGCCGATGACCCTGAGAAGGAGAACCGGCTTCGTTCCGCGACGCCGGAGCAGATAGTGTGTGCGCCATCCTTGCCGGGCTCCCCGGCCTCTCCTTCCCCCTCGCCCTCCCCGCGCCGCTCCTGCTCTCCTTCCCCCGAGAGCGAGCCCAAGCGGCGCCGCACCGGCCGCGGACCAACTCCCCGACCACCCTCCTCCCCACCAGCGCCGACCGCCCTACCTGCAAGACTCACCATTGCTGACCAGCCGCCACCTGCACCAGCGCTCTCACCTAAGGTGCTGGTGAAGCAAGGCGTCTCGAAATGCATGGAGTGCAACGTGGTGTTCTGTTCGCACGAGAACTACCGCATCCACAAACGACTGTATTGCCCTGCGCGAGGCGACGAGCGCTCTAGCCCCGCACCCGAAGGCCGGGCACCATACCGGCAGCTCATCTGCCTGGCTTGTGGAATACACTTTAGCTCACTGGATAACCTGACCACGCATCAGACGTACTACTGCGCGAAGCGAGAGACGAGGTCGCCAAGAGGCGGAGTTGTAACCTCGACTGTTGAAGCTCGCCCAGCCCCTGAAGGCTGGAAGTGTCCGTGCTGTGAAGTGGTGTCGCCTACAGCCGCGGCGGCACAGCGCCATATGGAAGCTCACGCGGGTGTCCGTGGCTTTCGCTGCACCATCTGCCGGTACCGCGGGAACACGCTCCGAGGCATGCGGACACACATCCGCATGCACTTCAACAACAAGAAACCTGCCGACTTACAGGAGGAGAGCTACATTGCGTGCGTGGTAGAGGAAGAGAGCCGGGAGGGGGGATCGCCGGGGGGAGGTGCGGGAGCTGGAGGAGGCGGGGGAGGAGGCGACCGGGTGCATCGTTGTACGTCGTGCGCTTACAGTTCCACGTACCGAGGGAATGTGGTCAGACACGCGCGACTTGTCCACGCCGCAGACGAACCCGACGAAGATTCTCCACCACCCCCCGCACCCGCTCCCCCCACCCCTCCCGAGATCAAGAAGGAACCACTGGAAGAGGGAGAGGAGACCCCCAACTACTGCAAGTCCTGCGACATATCCTTTAAGTACGTCGCAACTTACAAAGCCCACAAGCAGTTCTACTGCACGGCAAACACACCCGACGCGCCTGTCAATAACAATGTTCCAGCGACGCCGGCGCCGCTGCTCTGA
Protein Sequence: MCKADCQSVRRTHRAHVSAISHRICEDEEWGNENEAMPTEPRTPSSAGSSGGATPESRGTSPAGAPPAPDPPRLRLNPSLATDPALAPRATPLKREPRSPSPPATPAPAPVPPATARDYLAAAAAAFPGLFPTAAPGYVCKPCGIRYSSLSTLQAHQEHYCSNRRPKPAEPGDSPTDAAGDDSSGDSKTPRPAGKQYACAYCSYSADKKVSLNRHMRMHSSSPSGGATTPAPAAVSAPPSNGDASEGPPAPDRYCADCDIRFSSVKTYRAHKTHYCSTRQVVKGATVGRASSATSGSAPPSPGATPPAAPPPQYALALPTTPILILPIGLLRAASTLPGATLPDPDAPCFLLPNGTFQPLSQALPPSVVDSKPTEADVLKAANRRDRESGGGGTPLDLSVRRSPPADDPEKENRLRSATPEQIVCAPSLPGSPASPSPSPSPRRSCSPSPESEPKRRRTGRGPTPRPPSSPPAPTALPARLTIADQPPPAPALSPKVLVKQGVSKCMECNVVFCSHENYRIHKRLYCPARGDERSSPAPEGRAPYRQLICLACGIHFSSLDNLTTHQTYYCAKRETRSPRGGVVTSTVEARPAPEGWKCPCCEVVSPTAAAAQRHMEAHAGVRGFRCTICRYRGNTLRGMRTHIRMHFNNKKPADLQEESYIACVVEEESREGGSPGGGAGAGGGGGGGDRVHRCTSCAYSSTYRGNVVRHARLVHAADEPDEDSPPPPAPAPPTPPEIKKEPLEEGEETPNYCKSCDISFKYVATYKAHKQFYCTANTPDAPVNNNVPATPAPLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00835124;
90% Identity: -
80% Identity: -