Idim012708.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Idaea dimidiata
Gene Symbol
-
Assembly
GCA_949358125.1
Location
OX442333.1:695435-699616[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2.3 1.9e+02 3.6 2.0 1 23 268 291 268 291 0.96
2 16 0.018 1.4 10.2 5.8 1 23 296 319 296 319 0.97
3 16 0.016 1.3 10.3 0.5 3 23 353 374 352 374 0.96
4 16 1 84 4.6 1.7 2 23 441 463 440 463 0.90
5 16 7e-05 0.0057 17.8 2.5 1 23 469 492 469 492 0.95
6 16 2.6 2.1e+02 3.4 2.1 1 14 495 508 495 515 0.84
7 16 0.0025 0.2 12.9 0.0 1 23 525 548 525 548 0.95
8 16 0.00086 0.07 14.3 2.0 1 23 553 576 553 576 0.96
9 16 0.0085 0.69 11.2 0.5 2 23 589 610 588 610 0.96
10 16 0.00022 0.018 16.2 1.4 1 23 616 638 616 638 0.98
11 16 1.1e-05 0.00087 20.3 3.1 1 23 674 696 674 696 0.97
12 16 0.052 4.2 8.7 0.1 2 23 701 722 700 722 0.95
13 16 0.0031 0.25 12.6 2.4 1 23 748 771 748 771 0.96
14 16 0.00026 0.021 16.0 2.8 1 23 777 799 777 799 0.98
15 16 0.0012 0.097 13.9 6.1 2 23 806 827 805 827 0.96
16 16 0.0052 0.42 11.9 2.3 1 23 833 856 833 856 0.96

Sequence Information

Coding Sequence
ATGGCAACACCACAACATGACCTAAAACTCTACAACAACATACAATTTCTGAACGCGCACCTCAAAACTCTACTCCTGTCTCCAAAGTTCTGTTCCCTTTGTCTCGAGAACAAGGGAGAGTTCTTCCCTTTGAACAAAGAGTTGGCTATCAATGACGGAGCTGGTTCGAGGCCACTTAGAGATGTTAttgattatatatttaattttcatATTGAAGAAACAATGCCAAGCGGATTCATATGCGAAAAATGCACAGAGAAAATAATACATTGTTACACATTCATAGAAAACACTAAAAAGTTGTTTAAAGTTATAGAACATTGTGTAACGGACATTAACTCCAAGGTTTCAGACATAAATCATGAATTAGACGATAACAGAGACTATAACGACGCGAACGTTATGATTGTTGTGGAATATGATACAGAAACTTATAATGAAATTGATCAATTGACATCAGTTCAAAATGCAGTACTTTCCGACGTAccattgaaagtgaaaatcgctgTAGAAGCTTTCACGCCTGCAGTTACTGGTCTGAAATCTTTAGACAAAGAAAAAGAGATAAATACAATGATAGGAGACAATAAGAAAGAAGGTCTAAGACTGCCAGTTATGATGCCTACTCCAAGAATAATAAAACATCCCAGGGTTAAAAAAGCAATCAATATCAACCAAGAACCGGTTACTAATGATGTCCCAGAAACTAAAGTGACGCCAAATGTGATGCTAAAAGATGGAAAACTTCTGATAAAGCCTTTAGTCTTGAATAGTGGTCCGACAATACCAAAATACAACACGTATACTTGTGTTACATGTAGCGACATATTTACTAGTTACAGAAAAATGAAAGAACACGAAAAATCTAAGCACAGCACAACAATCTACAAATGTAGACTTTGCGAGAAGTGCTATAATACTCAGCAGTATCTAGATATGCATTATAAATCCAAACATTCAAAGGAAAGATGCAGATTTTGCTCAGAACTTTTTAATACTGATGACGGGTCGTTAGACGCGCATTTAAGTGAGAAACATAAGACCTCAATTTCGGCTTGTAATTTCTGCGAATTAGTCTATTACAACCATGATGAATTAGAGACACATGTTAACTCTACGCATGCAAATCAAGAAGTAATTTATGTAGCCAATAAGAAAACACAGTGTATTATGTGTTTAAGGAGCTTCGTCGATGATCAATTGGTCAACCATAAGTGCAAGTTCTCGTGTCTAGATTGTCCGGTAATTCAAGATAAATGTGTGCATTATGACTACCTCATGTCCTATAGAGAGCAAGTATTGAATCATGCGTCAGCTATTAAATGCATAGACTGTGACTATACCACCAAAAGGAAGGAACAGTTGCTTTGTCACGTGAACAGGGAACACTTAGACCATCATCCGTTTACATGCAGCGATTGCGGAACCCAATTTTACACGAAACAAAGCTTAAAAACTCATATAACTCAATTCCACCAAGAATATAAATGCGAATTCTGTGATACGGATTTCAATAAAAACCCTAAATTCTATCGCAGGCACCGAGAAATTTGCAAATCGATGACACGGTCATATGCTTGCGAGTTATGTGTAGCATCTTTTGATACTAAAGAAGAATTAGTGAAACACTTAGCAGTGAACCACAGTGAATTTGTATACCCTTGCTCCTTATGCAAAAAAGAATTTACCGATAAAAAATCTTTAGGTGAACATCACAGTAAAATCCATGGAAGTGTCCAAATGAAAAAACGCcgaaaatttattgaatgcaCCCTCTGTGATATTAACTTTAAGAATTTAAAGGAAATGTTCGATCATGAAAAATCACATGATGCATCTCAGACCTACCCATGCAAAGTTTGTCCAAAAACCTTTAAGACTTTAAGGCAAGTCTACATTCATAAGCAAAGACATTATACTCAAAGAAAACAATGCACTGGGTGTTTCAAATCAATCATAGTTACTCGTTTCAAGCAGCACCAAGAGAGCTGtcaatttttacaaaatattgatttaaatcACATTTGTGAACACTGTGGAAAACACTTCCCCTCTGCCATTACTTTGAAAGCTCACCAAAGGATTCATTTTAAGCCTATACCCTGTgactattgtaataaaatgctcAAACCTGATGGATTGGGAGCCCATATTAGGAAGAAACATCCACAGGTGGAGAAAACCGAAGACGTTCCAATCACAAATACCATCCGAAATAAGGAAGCAAAAGCGAAGGAATTCCATAATTGTGACAAATGCGAATATTCAACGAAATCTCGCCTCTCTTTAGAAAATCACATGAATCGTGTACATTTAAAAATCAAACCGTTCACTTGCAAAACTTGCGATAGATCATTTTGCGGGAAAATTAGACTAATCGAACATATGAAGATACATACCTCGAACAATGTATGTTTTTGTTCATACTGCGGCAAGAAATACGCTAACAAAGTATGCTTGAAAATGCATGTAAGACGTCATACTGGTGAATTCCCATACGAATGCAATATTTGTAAGGAAAAATTCCGTTCTTCCAGTATTATGAAAACTCATAGACTTAAAAAACATCAGGATAAGACAATTAACTGCCCACTTTGTGGTAATTGGTACCATTTGGCGACCGAAGTGAGGTATCATGTTAAAAAGTCGCATTGGACTAAAAAAGAGCCTTTTgattataagaaaattgttCCAAAAGAGTTTCATTACTTGTTTGAAGATCGTAGGCTTCAGAAATTGGGGGAAGAGAATGACGGCATAGCGTTATAA
Protein Sequence
MATPQHDLKLYNNIQFLNAHLKTLLLSPKFCSLCLENKGEFFPLNKELAINDGAGSRPLRDVIDYIFNFHIEETMPSGFICEKCTEKIIHCYTFIENTKKLFKVIEHCVTDINSKVSDINHELDDNRDYNDANVMIVVEYDTETYNEIDQLTSVQNAVLSDVPLKVKIAVEAFTPAVTGLKSLDKEKEINTMIGDNKKEGLRLPVMMPTPRIIKHPRVKKAININQEPVTNDVPETKVTPNVMLKDGKLLIKPLVLNSGPTIPKYNTYTCVTCSDIFTSYRKMKEHEKSKHSTTIYKCRLCEKCYNTQQYLDMHYKSKHSKERCRFCSELFNTDDGSLDAHLSEKHKTSISACNFCELVYYNHDELETHVNSTHANQEVIYVANKKTQCIMCLRSFVDDQLVNHKCKFSCLDCPVIQDKCVHYDYLMSYREQVLNHASAIKCIDCDYTTKRKEQLLCHVNREHLDHHPFTCSDCGTQFYTKQSLKTHITQFHQEYKCEFCDTDFNKNPKFYRRHREICKSMTRSYACELCVASFDTKEELVKHLAVNHSEFVYPCSLCKKEFTDKKSLGEHHSKIHGSVQMKKRRKFIECTLCDINFKNLKEMFDHEKSHDASQTYPCKVCPKTFKTLRQVYIHKQRHYTQRKQCTGCFKSIIVTRFKQHQESCQFLQNIDLNHICEHCGKHFPSAITLKAHQRIHFKPIPCDYCNKMLKPDGLGAHIRKKHPQVEKTEDVPITNTIRNKEAKAKEFHNCDKCEYSTKSRLSLENHMNRVHLKIKPFTCKTCDRSFCGKIRLIEHMKIHTSNNVCFCSYCGKKYANKVCLKMHVRRHTGEFPYECNICKEKFRSSSIMKTHRLKKHQDKTINCPLCGNWYHLATEVRYHVKKSHWTKKEPFDYKKIVPKEFHYLFEDRRLQKLGEENDGIAL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00835950;
90% Identity
-
80% Identity
-