Idim026656.1
Basic Information
- Insect
- Idaea dimidiata
- Gene Symbol
- -
- Assembly
- GCA_949358125.1
- Location
- OX442345.1:4396418-4397668[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0012 0.094 13.9 0.1 1 21 92 112 92 113 0.96 2 10 2.1 1.7e+02 3.7 0.7 5 23 143 161 142 161 0.94 3 10 0.0085 0.69 11.2 0.3 3 23 185 205 183 205 0.96 4 10 2.7e-05 0.0022 19.1 1.7 1 23 209 231 209 231 0.97 5 10 0.00071 0.057 14.6 0.1 1 20 236 255 236 257 0.93 6 10 0.069 5.6 8.4 3.5 3 23 271 292 269 292 0.95 7 10 0.00025 0.021 16.0 3.2 1 23 299 322 299 322 0.97 8 10 6.2e-07 5.1e-05 24.2 3.2 1 23 329 351 329 351 0.98 9 10 0.00041 0.033 15.4 4.5 1 23 358 380 358 381 0.96 10 10 0.00056 0.045 14.9 0.3 2 23 385 407 384 407 0.95
Sequence Information
- Coding Sequence
- ATGTCATTGACTTCTAGAAAAATACCGAAGAAACTGGTGATGGCGTTCTTTTGGAACGAGAGAAAACGATACCAAGATATTGAAcgaaattttctatttttagggAATGGTGGACCCGAAATTTTAACGAAAAATATTGGAAACATGAAGAAGtccaaaataagtaagtacaagCGAAGTCCTAAATCGTTAGCGAAGATAGCGATTAAGAACAATGCTGAATCCGTATTACGCTGTTGGACAGTAACACCCTTCAGATGGCAGCGAAGTAAATATGTTTGCGCATACTGTGATGAAGACTTCGTCGAGTGTTCCGCACTGAGAGATCACGTCAGAATCTGTTCCACTCTACACGGTATATCAGATATTTACAAGAAGTTCAAggaaatgccgttaataaacgTAGATGTAACTGACGCAGTTTGCTATTGCTCTGAACCTTTTCATGACATTGATCAAATGCGTGTACACCTCACAAATCACAGCTTCAACTTTGACGAGACAATCCCTGATGGAGTTTTACCTTTTGCACTGAAAGATGATTCTTGGGACTGCTTTATCTGTAAAGAGTCGTTCGGTAACTTCCTCAAATTGTACGAACACATGAATGTCCATTACCAATACCACATTTGCTCTATGTGCGGAAAAGGGTTTATGACGTCCATACGCTTAAGAAAGCATATAAACACGCATACGGAAAGGCTTTATCCTTGTGAGGAATGTGGCAAAAAATTCACAATGCAAGAAACTAGAGATCGACACATAATACTGTGCAAAAATGTCCTTTACAGCAGTGCAGGCCGATACGGCTGCCCTCATTGCCACGAGCGCTTCACAGGTTTTTATCAACGAATGTCGCACTTAAAACTAATGCATAATGTGAAAGAAATACTATACAACTGTAAACACTGCGATATGATTTTCAATACAAGCACGCAACGTTCGCGGCATATCCGTAATGTCCATATCCCAGACCCTTCAAGGTTTAGCTGTTCTGAATGCGGTATGAAGTTCAGAAGGAACCACGATCTGAAGAGGCATATCATAAAACATGAGGTCAGAGAGAAAGACTTTCAATGTGACCACTGCAGTAAATCGTACCTTACGAAGAAGGCATTGACGGCGCATGTTAATACTCATCATCCTAAAGTACAGTGTGAATGGTGCAATGTATCGTATACAGATAGGAATCAACTTATGATGCATTTGAAAGCAAAACACGATGACTTAATCGTTATTATTTCTCAATAA
- Protein Sequence
- MSLTSRKIPKKLVMAFFWNERKRYQDIERNFLFLGNGGPEILTKNIGNMKKSKISKYKRSPKSLAKIAIKNNAESVLRCWTVTPFRWQRSKYVCAYCDEDFVECSALRDHVRICSTLHGISDIYKKFKEMPLINVDVTDAVCYCSEPFHDIDQMRVHLTNHSFNFDETIPDGVLPFALKDDSWDCFICKESFGNFLKLYEHMNVHYQYHICSMCGKGFMTSIRLRKHINTHTERLYPCEECGKKFTMQETRDRHIILCKNVLYSSAGRYGCPHCHERFTGFYQRMSHLKLMHNVKEILYNCKHCDMIFNTSTQRSRHIRNVHIPDPSRFSCSECGMKFRRNHDLKRHIIKHEVREKDFQCDHCSKSYLTKKALTAHVNTHHPKVQCEWCNVSYTDRNQLMMHLKAKHDDLIVIISQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00835879;
- 90% Identity
- -
- 80% Identity
- -