Basic Information

Insect: Idaea dimidiata
Gene Symbol: Clamp
Assembly: GCA_949358125.1
Location: OX442338.1:5848455-5858432[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 3.5e-05 0.0028 18.7 0.7 1 23 119 141 119 141 0.99

2 7 6.1e-05 0.0049 18.0 2.4 1 23 337 359 337 359 0.97

3 7 2.6e-05 0.0021 19.1 0.1 1 23 365 387 365 387 0.98

4 7 2.7e-06 0.00022 22.2 3.0 1 23 393 415 393 415 0.99

5 7 2.2e-06 0.00018 22.5 0.4 1 23 421 443 421 443 0.98

6 7 5.6e-06 0.00045 21.2 0.7 1 23 449 471 449 471 0.98

7 7 0.0001 0.0082 17.3 0.2 1 23 477 499 477 499 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	3.5e-05	0.0028	18.7	0.7	1	23	119	141	119	141	0.99
2	7	6.1e-05	0.0049	18.0	2.4	1	23	337	359	337	359	0.97
3	7	2.6e-05	0.0021	19.1	0.1	1	23	365	387	365	387	0.98
4	7	2.7e-06	0.00022	22.2	3.0	1	23	393	415	393	415	0.99
5	7	2.2e-06	0.00018	22.5	0.4	1	23	421	443	421	443	0.98
6	7	5.6e-06	0.00045	21.2	0.7	1	23	449	471	449	471	0.98
7	7	0.0001	0.0082	17.3	0.2	1	23	477	499	477	499	0.96

Sequence Information

Coding Sequence: ATGTTCACGACGAACGCTGTGCAGGCCGGCACGGTGCCGACCCTGCAATACCAGGAACACCCGACACAGAAGTCTCAGGGGAAAAACATTGAGAATCAACAGAAGACTTCTCAGCAGACGCAGCAGACCCAACAACAGGAATTTCCAACATTTTGCTACACAACAAACGTAAACATGATTGGTAAAATAGGCACGGCAGCCACCAGTGGAGCAGGTGCTGTCAATATCACTCAACTCACGACCAGCGACGACAAGACATGTTATATCGCACAACCATTCTCCTACAACTATGCCCTCGTCAACCAGATGCAAATTGCTCCCAATGGAATACAGAACACAATATCAAACATTAGCTTCAAATGTGATGTCTGTGGACTCATGTTTGGTCATCTTACACTTTTGAATGCTCATAAAAGGATCCATGCTCAAGATACAGACGGCAACATAACAGTGGTTGCAACAGGAGTGAGCGGAGGCAACGAGGTCACCATGAACCCCCACATCCAGATACTGTCACCGGAAACTGGAGATCAGCAGCAGCACCATGTACAGATACAAGATACAAAACCGGTGATTATTGACAAAATTCAGAAGTGCATCACATGCGGCGGTAGTATCAACAGTAATCCCAAACGAAAAGGACCTAAACTGATTAGATGTGAAAATTGTATAGCTCAAGACACCGTTGATCAGCAGAGGAATAATCAAATGAACAACCAGATATTCGTGGCGGCGGAGGAGAACGTGAAGTTCGAAGTGGGTGCCGGCGTGAGCGCGGTGCACGGCGGCGGCGTGCCGGCGGCGGACCCcctcgccgcgccgcccgcaccGCCGCAGCACGCGCCCTCGCAGCCACACCAACAGACGCAGAAAACATTGCCCGGCCACCATCCTGTGAAAAAGAGAAACTTAGCATCCGTAACGAAATGTCAAAACTGCAACGGTTCGGGCATTATCTTCGTGGGCGGCATCAAGAACAAACTAAACCAGACTAATGTAGAAAAGCCTTTCCATTGCAACATTTGCGGCGGCACGTTTTCTAGATACTCCTCCCTTTGGTCACATAAGAAGCTACATTCGGGGGAGAAGAACTTCAAGTGTGGTATCTGTGGCATTGCCTTCGCTAAAGCTGTCTATTTGAAGAATCATTCGAGGATACATACGGGCGAGAAACCTTACAGATGTAATACTTGTGGAATGCAGTTTTCGCAATCTCCACATTTGAAGAATCATGAACGAACTCACTCTGGGGAGAAGCCATATGTTTGCGAGGTTTGCGACAAAGGGTTCGCGCGGCACGCCACGTTATGGAATCATCGTCGTATTCACACCGGAGAGAAACCATACAAATGCGACACTTGCGGGTCGGCGTTCAGCCAAGCGGCGCATCTCAAGAACCACGCGAAGGTACATTCCGGCGAGAAGCCGTTCAAGTGCGACATCTGTACGGCTGCCTTCGCCGACCGGTTCGCGCTCAAGAGGCATAGGGGGATCCATGACAAATACgGTCAAACGACACCATTAATATCGACTAGAACACAGAACCAATCTGACCAGCAGTCTGCCCAGAACTCTGAAGCGGCCCAGCCAGCGGTTGAAGTTGAACTTCACAACGAACAGGGACTATGA
Protein Sequence: MFTTNAVQAGTVPTLQYQEHPTQKSQGKNIENQQKTSQQTQQTQQQEFPTFCYTTNVNMIGKIGTAATSGAGAVNITQLTTSDDKTCYIAQPFSYNYALVNQMQIAPNGIQNTISNISFKCDVCGLMFGHLTLLNAHKRIHAQDTDGNITVVATGVSGGNEVTMNPHIQILSPETGDQQQHHVQIQDTKPVIIDKIQKCITCGGSINSNPKRKGPKLIRCENCIAQDTVDQQRNNQMNNQIFVAAEENVKFEVGAGVSAVHGGGVPAADPLAAPPAPPQHAPSQPHQQTQKTLPGHHPVKKRNLASVTKCQNCNGSGIIFVGGIKNKLNQTNVEKPFHCNICGGTFSRYSSLWSHKKLHSGEKNFKCGICGIAFAKAVYLKNHSRIHTGEKPYRCNTCGMQFSQSPHLKNHERTHSGEKPYVCEVCDKGFARHATLWNHRRIHTGEKPYKCDTCGSAFSQAAHLKNHAKVHSGEKPFKCDICTAAFADRFALKRHRGIHDKYGQTTPLISTRTQNQSDQQSAQNSEAAQPAVEVELHNEQGL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01417101;
90% Identity: iTF_00835869;
80% Identity: -