Idim010773.1
Basic Information
- Insect
- Idaea dimidiata
- Gene Symbol
- -
- Assembly
- GCA_949358125.1
- Location
- OX442331.1:27314157-27318704[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.071 5.8 8.3 3.3 1 23 236 258 236 258 0.98 2 17 0.15 12 7.3 0.4 3 23 297 318 297 318 0.95 3 17 5.5e-05 0.0045 18.1 2.5 2 23 342 363 342 364 0.95 4 17 2.2e-05 0.0018 19.3 0.4 1 23 373 396 373 396 0.92 5 17 0.03 2.4 9.5 0.1 1 23 405 427 405 427 0.92 6 17 1.9e-05 0.0015 19.6 1.3 1 23 433 455 433 455 0.96 7 17 0.00086 0.07 14.3 1.7 1 23 461 483 461 483 0.96 8 17 0.014 1.2 10.5 0.4 1 23 592 614 592 614 0.98 9 17 0.0001 0.0084 17.2 0.8 2 23 621 643 621 643 0.92 10 17 7.7e-05 0.0063 17.6 0.9 3 23 651 671 650 671 0.98 11 17 4.9e-06 0.0004 21.4 0.2 1 23 677 701 677 701 0.97 12 17 0.03 2.4 9.5 0.1 1 23 707 729 707 729 0.95 13 17 0.34 28 6.2 0.7 1 23 742 765 742 765 0.94 14 17 0.00022 0.018 16.2 0.0 3 23 818 839 817 839 0.95 15 17 2e-05 0.0016 19.5 1.0 1 23 845 867 845 867 0.93 16 17 0.098 7.9 7.9 0.0 3 23 876 896 875 896 0.95 17 17 0.026 2.1 9.7 0.0 6 22 904 920 903 920 0.94
Sequence Information
- Coding Sequence
- ATGCTCAAGGGGTCAACAGTACCTGCATTACCTATCTTGCAAGACTATACAGATGAGACAAAAACAAGTGTATGCCGGTTGTGTGCAAATGTAAGAGATGTAATGCACTTTATACATGAGAACAAAGAACAACAATTGAATATCAgtgaaaaaattaacaaatatttacctattgaGGTCTCTCCATCGGACCAGCTATCCCAGACAATATGTGGGTCGTGTCTCCAGATGCTGGTAGCGTGGGAGCAGTTCCTGCACCAGTGTGTGCAAGTTGATGCCAAGTTGAAGAAGGAAGCTGAACTTGTGCACCAGAAGGCACAACAGATAAATACTACAACTGCAAATGATTCCAACGACACTAGCAGCCTGTCAGTGCGATACAATGATATTAAAACTGTACTGACAGAACAATTGAAAGCTTTACAAATAGAAGAGAGTTCAGATTTGACCATCATGTGTCAAGTGCGCGCGTGTGCCTCCAAGCGAGCTAACACACTCAACGGCTTCGTCCTGCACATGATGAGGGTGCATGCTGCCGAGCTCGCTGGCAAGACAGATGTGGAGAACTTCGTCAAGAACAACGTCACATTCGAGGAGAATTTACAGAGCGATGAGGAGGGACATTCGTACTCAGATTCCGGATCCGGCCCGGCCCCGGCCCCTATAGGACCGGAGCTATCCCGGCCCGAACCAGATATCCCCTGCTTCTGCTGCCCGTTCTGCTCGAGCGGATTCTCGGTGAAAACTCGCCTGCTGACACATCTGAAGACGCACGATATCGACGTGGAGTTGGAGCAGGGCGTCACATGCTGCGGGGCGCCGTACAGCAAGCAGGCCTTCGTGCAGCATCTGCAGGAGCGACACGAGCGGCGCCCCGCGCAGCCCTGGTGCCGGTCCTGCGGGCACACGGCGCCCGACGACGCCGACCTACAGCGACATATCCGGGAGAACCACCGGGAAACTAAAAGAAGGAAGCCGAAACCGCCGCGCGACGACGACAAAAACCAGAAGAATATACCTGCAGTCTGTCCCGAATGTAACAAGACTCTATCCAACAAGTATAACATGACGGCACACTTCAGACGGCATCACGGAACCGGGGCGGGATCTATCCGGCACGTGTGCGATCAGTGTGGAAAATCATACAGTACTGCAGGAAACCTGCGACTGCACAGTGCGCGAGCGCATGGCACGGGGGAAGCGCGCGCTCGCTTCGTCTGTCCGCGCTGCGGCGAGCGCTTCGATACGCTGATAGGTCGCGAGTCGCATCTAGCGCTGCACACCGGGGCCCGGCCCCATCCCTGCCGGTTCTGTGACAAGTCGTATCGCACGCGGGACGCGCTCGTCAGACACATGGATGTGCATCTCGACGTGAGGAAGCACACGTGCCTCGCTTGCGGCCGCGGCTTCCGGAAGCGGAGCCATCTCGTAGCGCACGAGGCGACACATGACAAACCGTCGCCGCCGGCCGCGTCCGACCGCGGGACCGACGACGGGGACGACGCGGGAGACGAGTCGGACGACCGGTCATACGACAGGTTCTATGCGGCGCTCGTCGCACTGCGCGACCACTACGTGCGGTCACACGGGGTCGTAGCGTCCGAGGCGGACGGAGAGCGGAGCGAGGCGGAGCCCGAGCCGGAGTCGGAGCCCGACCTGGAGGCGTACGATGACCTCTCGCGGAGCATCTGTCGCGGGTCGAACTCGGCGGACAGCGAGGCGCGGCGCGCGAGCGTGCGGGCCGCGCGCTGCGTGCTGGCCGGACGCGAGGTCTACGTGTGTAGCACGTGCGGCGCGCAGCTCGCCGCGCCGCACACCTTGCTGCACCACCTGCGGATCCACACGGGCGAGCGACCCGCCGTCTGCCACCGCTGCGGGAAGGCGTTCCGTACGACGCCGGCGCTGCGTCGCCACCTGGCCGAGACGCACGAGCGCGCGCGACGCCGCGACTGCCCGCGCTGCGCCCGCACGTTCGCCAACACGCAGAACCTGCGGCAGCACCTGCGCACGCACACCGGCGAGCGGCCCTACGCCTGCCCGGCGCCCGGCTGCGGCAAGCGGTTCGCGCAGAGCGGCTCGCTGCACGCGCACCGCAAGACGCACGAGGCGCGCCTTCCCTTCGCCTGTCGCTCGTGCGGCGCGCGCTTCCGGCTGCGGGCCGGGCTCGCGCGCCACGCGGCGCGGCACGCCGGCGGGCAGGCGGCCGCCCGCGCCGACCGCGCGCACCACTGCGCCGTGTGCGGCGCCGCCTTCCGCACGGGCCGCGCGCGGGCGCAGCACGAGCGACGCGCGCACGATGCGCCCCCAGACCCCGCCTTCCCGACGCATCTCATCGCGGGCGGGCGGCGGCGAGCGGCGTGCGGCGCGTGCGGCGCGCTCGTGGCGGCGGCGGGCTGGCGGCGCCACGCGCGGCggcacgagcgcgggccggcgGCAGGCGCGGGCCGGGCCTGCGACCGCTGCGGCCGAGTGTTCGCCGAGGCGGGCAACCTCGCGCGGCACGTGCGCGCCGTGCACCGCGCCGCCCGCCCGCACGCGTGCCCGACGTGCGGGCGTCGCTTCTCGCGCGCGGAGCACCTGCGCGAGCACGCGGCGCTGCACGGCGCGCCGCTCGCGCGCTGGCTGTGCGCGACGTGCGGCGCGGCGTGCCGCTCGGCGGCGGCGCTGCGGGCGCACGGCGCGGTGCACTCGCGGCGTCACGGCTGCGCGTGCGGCGCgacgttcgcccgacgctcGCAGCTCACCGACCACGAGCGACGCCGGCGGTGCGCCGCGACGACCCCACACCCTAAGACGGAGCCGACCGTACCGGCGCGACCTATCGCTGCGGAGCCGGACGATGCCGAGACCGAGACTTTGCCGGATCTCACGGATTATTTCGATTACTTCTCTTGA
- Protein Sequence
- MLKGSTVPALPILQDYTDETKTSVCRLCANVRDVMHFIHENKEQQLNISEKINKYLPIEVSPSDQLSQTICGSCLQMLVAWEQFLHQCVQVDAKLKKEAELVHQKAQQINTTTANDSNDTSSLSVRYNDIKTVLTEQLKALQIEESSDLTIMCQVRACASKRANTLNGFVLHMMRVHAAELAGKTDVENFVKNNVTFEENLQSDEEGHSYSDSGSGPAPAPIGPELSRPEPDIPCFCCPFCSSGFSVKTRLLTHLKTHDIDVELEQGVTCCGAPYSKQAFVQHLQERHERRPAQPWCRSCGHTAPDDADLQRHIRENHRETKRRKPKPPRDDDKNQKNIPAVCPECNKTLSNKYNMTAHFRRHHGTGAGSIRHVCDQCGKSYSTAGNLRLHSARAHGTGEARARFVCPRCGERFDTLIGRESHLALHTGARPHPCRFCDKSYRTRDALVRHMDVHLDVRKHTCLACGRGFRKRSHLVAHEATHDKPSPPAASDRGTDDGDDAGDESDDRSYDRFYAALVALRDHYVRSHGVVASEADGERSEAEPEPESEPDLEAYDDLSRSICRGSNSADSEARRASVRAARCVLAGREVYVCSTCGAQLAAPHTLLHHLRIHTGERPAVCHRCGKAFRTTPALRRHLAETHERARRRDCPRCARTFANTQNLRQHLRTHTGERPYACPAPGCGKRFAQSGSLHAHRKTHEARLPFACRSCGARFRLRAGLARHAARHAGGQAAARADRAHHCAVCGAAFRTGRARAQHERRAHDAPPDPAFPTHLIAGGRRRAACGACGALVAAAGWRRHARRHERGPAAGAGRACDRCGRVFAEAGNLARHVRAVHRAARPHACPTCGRRFSRAEHLREHAALHGAPLARWLCATCGAACRSAAALRAHGAVHSRRHGCACGATFARRSQLTDHERRRRCAATTPHPKTEPTVPARPIAAEPDDAETETLPDLTDYFDYFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -