Idim022286.1
Basic Information
- Insect
- Idaea dimidiata
- Gene Symbol
- -
- Assembly
- GCA_949358125.1
- Location
- OX442340.1:2079083-2081668[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0044 0.35 12.1 0.1 1 23 25 47 25 47 0.94 2 17 0.024 1.9 9.8 1.0 1 23 75 98 75 98 0.97 3 17 0.0001 0.0082 17.3 0.0 1 23 126 148 126 148 0.96 4 17 0.09 7.3 8.0 0.1 6 23 156 174 153 174 0.94 5 17 0.032 2.6 9.4 0.6 1 23 257 279 257 279 0.98 6 17 4.1e-06 0.00033 21.6 0.3 1 23 284 306 284 306 0.93 7 17 0.001 0.082 14.1 4.1 3 21 314 332 312 335 0.92 8 17 3.3e-06 0.00027 22.0 1.0 1 23 341 363 341 363 0.97 9 17 5.5e-06 0.00045 21.2 0.1 1 23 369 393 369 393 0.98 10 17 0.0095 0.77 11.1 0.8 1 23 399 421 399 422 0.95 11 17 1.4e-05 0.0011 20.0 0.4 1 23 427 450 427 450 0.98 12 17 2.2e-06 0.00018 22.5 3.0 1 23 458 481 458 481 0.92 13 17 0.00014 0.011 16.9 0.9 2 23 489 511 488 511 0.95 14 17 0.0011 0.092 14.0 3.3 1 23 517 540 517 540 0.97 15 17 0.012 1 10.7 6.1 1 23 547 570 547 570 0.96 16 17 6.2 5e+02 2.2 0.8 2 21 574 593 573 594 0.91 17 17 4.5 3.7e+02 2.6 3.4 3 23 596 617 595 617 0.93
Sequence Information
- Coding Sequence
- ATGCTAAAGAGTCAGTTATCTTTATTACAGCAAGCTGGAATACCCATAGTAAAGTTAGAGAGACTCAAAGTGTTCAGCTGTGAAGATTGTGATAAAGTATACCCTTCGGTGGATAGATTGGCTGACCACAGTCAGTGGCATGATTTGATGGAGTATTTGGAACAACCTAGGGTAGCAGATCATTTTGATAGTGCACACGTAAAGTTAGAACGAGTGAGCATATTCAGATGTGGTTTCTGTTCTGCTGCATTTGTTGACGTTCATCGGTTTCAAAAACATCAGGCCACTGCACATAAGAAACAGAAAAACAATCAAAGTACTCAAAAAGGTACATCAAATATAGATGACGGCAACAACAATGAGCTTGAGAAGCCTTACAAATGTGAGGAGTGTGGTTGGAGGTTCGTCGCAGAGTCTACGCTTAAAGCTCACGGTGCAGTCCACAATCCCATGCACACCTGCTTCTGCGGCGTCGCTTACTATCAACAACGAGACCTCGCCGCCCACCGTCGGCTCGTGCACCCTACAAAACTAACCTGGAAACAAGAAACCAAATACAAAGGACCCAAAGTCAAGTCAGAATTTGCTACGAAACTTGAGCCCCAATCCGACCAATCAGACTCCGAACCAACtccaaaaaaatcaataaaacccCGACTAAAAGCTGAACTGGtcacaaagaaaaaaacaaaaaccaaaaagaaacaaaagtgGAAAGTCAGAATAGAAAAGAGTAAGATTAACAAGGAAAACATAAGTGGGCCTCCATACCAGTGCCCTGAATGCCctaacaactttttaaaattaagcaCTTATAAGTTACACTTGATTAAACATACAGATCGAGCTCATAAGTGTCCCGATTGTGGCAAGGTATTTGCACTTAAGAGTTCTTTGCAAGTACATAGTGTAGTTCATACCGGTGAAAAGCCACATCTATGTGAAATATGTAACAAGGGATTCACTCAACATTCTGCTCTCAATAACCATCTTAAATGTGTCCATGCAAATACAAAAGAATTCAAATGTAACATATGCAAcaaaagatttaatttaaaagatcaATTGGCACGCCATCAAGTGATACATACCGGGTTGAAACCATATGTTTGTACGTTTAAAACTTGTGGGAAAGGGTTTGCTGATCAGTCAGCTTTAGGGCGACACATTCGGATACATACGGGAGAATTAAAGTATTTCTGCGAGTACTGCCCAGCTGCATACACCGACTTCAGCGCTAAAACAGCACACGTTAACCGACACCAccttaaaagaaaatatgaatGCAAGATCTGTTTAAAATTTCTAGCCTCACCGAATAATCTTAACACACACATGCGAACACTCCACGGTATCGGCCAACAAAAACGATTTGAGTGCAACGACTGCGGGAAATCATTCAatcaaaaacaacatttaaagtTACATATAGACTTTTATCACAAAGATGGACAGAGAATGGTAAAGTGTGATTTTTGTCCGAAAACCTATAAACATCCTAGGTCACTTGAAAACCACGTGGCTAGAGAACATCTTCTGAAATATGCATACCAATGtgactattgtaacatgataTCTAAAACTAAATGTAATTTGGTATCTCACATAAAGTATAACCACATTGGAACGCCAAAGAAATACCAGTGTGATTACTGTCACAAGAGATTTCATAAAAAAGAGTATATTATGATGCATATAACCAAAGATCATTTGAACATCAAATGCGTTCGGTGTAAAACGGTGTATTTGACACCATTGGAGTTGAAAAAACACAAGTGCGTCTTTTGTACTGAGTGTAAGAGGTATTTTGGTACCAAATTGAAACTGAAATTCCATAAGAAAAAGGTGCACTCTGTGAAGGATACGAACAGTATCTCAAATGATAGGAATTCCATAAATTCAGATGAAATGGCATTTTCAAATGATATAAATTCCATCAATAAAGATAACAAAATGGAAATTTCGAATGATAGAAATCCCATTAATTTAGATAAAATGGAGATTTCAAATGATACGTATTCCGTTTATTTAGATAAGAATGGAATTTCAAATGATAGAATTTCCATAAATTCAGGTGAAATGGCAATTTCGAATGATTTAAATtccatcaataaaaacaaaatagaaatttCAAATGATAGAGATTGTAACAATTCAGATAGAACAAATGATTCGAATTTCATTAATTCAGATAACTTTGAGATTCCAAATGGATTGaaaaattag
- Protein Sequence
- MLKSQLSLLQQAGIPIVKLERLKVFSCEDCDKVYPSVDRLADHSQWHDLMEYLEQPRVADHFDSAHVKLERVSIFRCGFCSAAFVDVHRFQKHQATAHKKQKNNQSTQKGTSNIDDGNNNELEKPYKCEECGWRFVAESTLKAHGAVHNPMHTCFCGVAYYQQRDLAAHRRLVHPTKLTWKQETKYKGPKVKSEFATKLEPQSDQSDSEPTPKKSIKPRLKAELVTKKKTKTKKKQKWKVRIEKSKINKENISGPPYQCPECPNNFLKLSTYKLHLIKHTDRAHKCPDCGKVFALKSSLQVHSVVHTGEKPHLCEICNKGFTQHSALNNHLKCVHANTKEFKCNICNKRFNLKDQLARHQVIHTGLKPYVCTFKTCGKGFADQSALGRHIRIHTGELKYFCEYCPAAYTDFSAKTAHVNRHHLKRKYECKICLKFLASPNNLNTHMRTLHGIGQQKRFECNDCGKSFNQKQHLKLHIDFYHKDGQRMVKCDFCPKTYKHPRSLENHVAREHLLKYAYQCDYCNMISKTKCNLVSHIKYNHIGTPKKYQCDYCHKRFHKKEYIMMHITKDHLNIKCVRCKTVYLTPLELKKHKCVFCTECKRYFGTKLKLKFHKKKVHSVKDTNSISNDRNSINSDEMAFSNDINSINKDNKMEISNDRNPINLDKMEISNDTYSVYLDKNGISNDRISINSGEMAISNDLNSINKNKIEISNDRDCNNSDRTNDSNFINSDNFEIPNGLKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -