Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 7.5e-06 0.0098 16.6 0.1 18 41 200 220 192 222 0.89

2 5 0.047 61 4.5 0.3 18 41 228 248 224 250 0.85

3 5 0.019 24 5.7 1.3 17 38 255 277 245 277 0.80

4 5 0.00071 0.93 10.3 0.6 18 40 284 303 280 307 0.89

5 5 0.32 4.2e+02 1.8 1.3 18 40 312 331 304 333 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	7.5e-06	0.0098	16.6	0.1	18	41	200	220	192	222	0.89
2	5	0.047	61	4.5	0.3	18	41	228	248	224	250	0.85
3	5	0.019	24	5.7	1.3	17	38	255	277	245	277	0.80
4	5	0.00071	0.93	10.3	0.6	18	40	284	303	280	307	0.89
5	5	0.32	4.2e+02	1.8	1.3	18	40	312	331	304	333	0.82

Coding Sequence: ATGCTTTCCTCACAGGTCCAATGGAACCAGAACCCGCCGACACCATCAGTCAACGTGGTCTACCCTCAAACACAAAGCGTTATAAGTCCAACGAACTATCCATCCGCCACATACTCCTTTACCGCCGATTTTCGAGCCCCAAACCAATCCGATCCCCTCATCACAGCTTCTTCGACCTTCAAACCTCTTTTACAGAACCCTCAGAAATCAAATAACTACATATTCCAACAAAAATCAGGCTTCGGCACCAAACCTGGCCAGTGCAAACGAACTTCGAAAATATACGATGGGCAGAAACTGTATGATGGGCAGAAGTTTTATGAAGGGCAGAAGTTATATGACGGTCAGAAGTTGTATGACGCACAGAAGTTGTACGAAGCACAGAAATTGTATGATGGCCAGAAGATGTACGATGGGCAGAAATATTACGATGGGCAGAAGGAAGAAAATTTGACGGCAGAGTATTCTATATTAAATCCGCATCAAGGACAGATGCATGCTCAAGATTATGGATACCCTTCTTGTGTTAATACTCCAGGGAAAGTTCAGGTTGGATCCTTGAGCGGATGTTCAGAAGACGATGACCTGAAGCCAAACCTGTGTCGGATCTGTGGCAAGACTTACGCTCGTCCAAGCACTTTGAAGACTCATCTCAGAACTCATTCTGGTGAAAGACCGTACCGCTGTGGGGACTGCCACAAGAGCTTCTCGCAAGCAGCTAATTTGACTGCCCACGTTAGGACGCATACCGGGCAAAAGCCTTTCAGATGTCCAATCTGCGATCGCCGGTTTAGTCAAAGTTCCAGCGTTACAACCCACATGCGGACACATTCCGGAGAGAGACCGTACCAATGTAGATCGTGTAAGAAGGCATTTTCTGATAGTTCCACGTTGACAAAGCACCTCAGGATACACTCCGGTGAAAAACCTTATCAATGCAAGTTGTGTTTACTCAGGTTCTCTCAATCGGGCAACTTGAACCGTCATATGCGGGTCCATGGCAATATGGCGGGAGGAATGCTCGGGTGA
Protein Sequence: MLSSQVQWNQNPPTPSVNVVYPQTQSVISPTNYPSATYSFTADFRAPNQSDPLITASSTFKPLLQNPQKSNNYIFQQKSGFGTKPGQCKRTSKIYDGQKLYDGQKFYEGQKLYDGQKLYDAQKLYEAQKLYDGQKMYDGQKYYDGQKEENLTAEYSILNPHQGQMHAQDYGYPSCVNTPGKVQVGSLSGCSEDDDLKPNLCRICGKTYARPSTLKTHLRTHSGERPYRCGDCHKSFSQAANLTAHVRTHTGQKPFRCPICDRRFSQSSSVTTHMRTHSGERPYQCRSCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVHGNMAGGMLG

Sequence clustering based on sequence similarity using MMseqs2