Idim006876.1
Basic Information
- Insect
- Idaea dimidiata
- Gene Symbol
- -
- Assembly
- GCA_949358125.1
- Location
- OX442329.1:18282874-18284859[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.5e-09 2.9e-06 27.6 0.0 3 38 10 46 8 50 0.93 2 2 9 4e+03 -1.7 0.0 28 44 610 626 610 627 0.77
Sequence Information
- Coding Sequence
- ATGCCAAAAAAACGCCAATACGCGAAAGAAGCTATTGATAAGGCTgtcaattttgtattaaacgaAGGGGGTTCTGCACGCGAGGCTTCAAAAAAATATGGTGTTCCAAGGAGTAGCATCCAATTCAAGATAAAGAACCCAGCTACAAAGTTTAGGTCTGGGCCTGATCCTATATTATCTCAAGATGAAGAGAATGCTTTGTGCGACCTGATCATCAATTTGGCTAAACGAGGATTTCCTCGAAAAAAAGAAGATATACAAGCTTCTGTTCAAAAATTTTTAACAGAGAATCCAAGGCCTAATCCGTTTCGAAACAATAAACCAGGCGATGTATGGTTCCGATCATTTTTGAAACGTCACCCTATAATTTCAGTAAGAACATCTGAAGGTGTGACTAATGCCAGCTCATGCGTTTCCGAAAAAGATATAAGAAAATGGTTTACTGAAATCCGCCAGTACATAAATGATGAAAATCTTATTGAAGTGATTCAAGATCCCTCTCGTATCTTTAATGCCGATGAAACAGGTTTTAATATTTGCCCAAAAACGGGCAAAGTTTTAGCAGAAAAAGGGAGTAAGAATGTTTACCAAATAGAAAAAGGATCAGCTAAAGAAAATATAACAGCTTTGTTTACCTTCTCTGCTGCTGGTCTTACTTTGAAGCCTTTAATCATCTACCCCTATAAGAGAATACCTGACCGAGTAACTCTTAGCGTACCGTCTGGATGGGGAATAGGTCGCAGTGACTCTGGATGGATGACCGCTGCGGTCTTCAGTGATTTTATTTCCAATTGTTTTTATCCACAAATATTGACTCTCAACATCCCTTTTCCTGTCATTTTATTTGTAGACGGACATAAAACTCATCTAACAATGGAAGTGTCAGAGCTATGTCGAgctttaaaaattcatttaattGCATTGTATCCCAACGCAACTCGCATTTTGCAACCTGCAGATGTGGCAGCTTTTCGTCCAATAAAATCAGCTTGGAAAAGGGAGCTTCGTCAATGGTACGCCGACAATAACTATAGAGAAAATTTGACCAAAGATCGGTTTGCTCCATTACTCAAAATGGTCGTGGAGAAATCTATCAAAGAGAATACCGTTATAAATGGATTTAGAGTCACGGGTTTATTTCCCTTTGATGAAAATAATGTAGACTATAGCAAATGTATCGCCACTACAAAAACATCTAATTTACAAGAACACAGCATACCTGAGACAATTAATTACAAGTTGTCATATAAGGATTTTTGCAATACCGTCGGTAACGACATCTTGCAAAGATGTCGTTTACATACAGACGAATGCTGCGACGACAATTATTTTATTGCTATATATAAAATATGGCAGAAATTTCACGTTAACAGTTCCACGCAGATGCCATTGGCCATAGGTAATATAGAAGAACAAGACACGAAAAGTGAGGACCTACAGAATATTCAGAACATCGAAGAAATACTACAATTGACCAACGAAGATTTAATGGAAATTCAGAACATGGGTCAACAAGAAATAAATTATGAGGAATGTAAGAATATTCAGAATAATATGAAAGAAGATACGGATGCTAAAGAAACtgaaaaacaactaaaaattgATTGGATCCTTGATGAGTTTACTGGTATATTTGTTACAAGAGAAAGGAATGCAGTGTTAAATACATCTATTAACATaatgactaaaaataaaaaaaacatgccggaattgaaagaaatatctttaaatttgGAAAATACAGAAGGATACCAGAAATCTCAAgactttaatttaaatgaagCTGGCCCATCAGGTCTCACGTGTGGAAacagtaaaataaacataatctcTAACGAATCTTTACAAAGCTACCTAAAAAAAGAAATGCCTACATCACCTACAAGAAAAGGAAAGCGACAAGTAGAAAAATTACCATTTGCGTTAACTTCGGATGAATATTTGGAACGAATGAAACTAAAGAATTCACAAAAGCAAGAAAAATAG
- Protein Sequence
- MPKKRQYAKEAIDKAVNFVLNEGGSAREASKKYGVPRSSIQFKIKNPATKFRSGPDPILSQDEENALCDLIINLAKRGFPRKKEDIQASVQKFLTENPRPNPFRNNKPGDVWFRSFLKRHPIISVRTSEGVTNASSCVSEKDIRKWFTEIRQYINDENLIEVIQDPSRIFNADETGFNICPKTGKVLAEKGSKNVYQIEKGSAKENITALFTFSAAGLTLKPLIIYPYKRIPDRVTLSVPSGWGIGRSDSGWMTAAVFSDFISNCFYPQILTLNIPFPVILFVDGHKTHLTMEVSELCRALKIHLIALYPNATRILQPADVAAFRPIKSAWKRELRQWYADNNYRENLTKDRFAPLLKMVVEKSIKENTVINGFRVTGLFPFDENNVDYSKCIATTKTSNLQEHSIPETINYKLSYKDFCNTVGNDILQRCRLHTDECCDDNYFIAIYKIWQKFHVNSSTQMPLAIGNIEEQDTKSEDLQNIQNIEEILQLTNEDLMEIQNMGQQEINYEECKNIQNNMKEDTDAKETEKQLKIDWILDEFTGIFVTRERNAVLNTSINIMTKNKKNMPELKEISLNLENTEGYQKSQDFNLNEAGPSGLTCGNSKINIISNESLQSYLKKEMPTSPTRKGKRQVEKLPFALTSDEYLERMKLKNSQKQEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -