Ibis004794.2
Basic Information
- Insect
- Idaea biselata
- Gene Symbol
- -
- Assembly
- GCA_958496205.1
- Location
- OY292394.1:54999708-55015848[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.013 0.95 10.8 0.1 2 23 417 438 416 438 0.97 2 12 0.0079 0.58 11.4 0.0 1 23 449 472 449 472 0.95 3 12 0.048 3.5 9.0 4.3 2 23 648 669 647 669 0.95 4 12 0.0016 0.12 13.6 1.3 1 23 681 704 681 704 0.91 5 12 0.0002 0.015 16.4 0.4 2 23 711 734 710 734 0.96 6 12 0.83 61 5.1 0.4 3 23 742 762 740 762 0.92 7 12 0.0077 0.57 11.5 1.8 1 23 768 790 768 790 0.98 8 12 4.1 3e+02 2.9 0.1 3 19 802 818 801 821 0.87 9 12 0.15 11 7.4 0.2 1 23 901 923 901 923 0.96 10 12 1.8 1.4e+02 4.0 7.2 1 23 930 952 930 952 0.95 11 12 0.0012 0.091 14.0 1.8 1 23 986 1009 986 1009 0.95 12 12 5.4 4e+02 2.5 0.4 2 12 1017 1027 1016 1028 0.90
Sequence Information
- Coding Sequence
- ATGGATAGTagagtaggtaattgGTCAGTCCTCGGCTACGAAATAGATCTAACATCAATAACCAGAGACCAAAAAGTTGATCTAAACGACAATGCTTACCAGTTTCTGATGAAACTTGACCTAAATGAAACTGACACTGTTCAGTTTCAAGAAGCCATAGACTCTAATGGAGACCAGCTATACGTACTAGATGACGGGACGCAGATTCGAGCCTCGCAAATACATTTCGATAATGAAGATGAACTTTTAGACTTAACACTTGAAACACTACCATTTGAACAGATAAACCAAATCGATGATGAAGTTGACGGTACGAATTTTGAAgatgttaattataaaattgtagcTAGCCCTGTTCCGAGTACAAACACCAGCCCAAAACATGGGTTTATGACTACAGTACCTTTCaaactaatttgtaataatACTACCGGATTTGAAGCTCAATTTACCAAGTATATAGAGCAAAGTACCAAAACTTACACCACTTTGAACAATGCggcaaagaaaaacaaatcacCAAGGAGTCTGATTAAAGATAATTTCAAAGATAAAGAATTTAGATATACGAGAGAAGAAATACTTAATATATTAAAAGATTCGCCCGTTACAAGTATACCTTATGAAGTTGGTGATAGAAAACATGTTAGGAAAATGGATCCGACGCGAATGGTTCAGAAAAGTTCAGTGAAAACAGTTGACATCGAAGGACTGGTTATTGGAGACGGCGGTAGCAAGATCTGCTTTATCTGCGGTCTAAATGTCATAGACAAAGTCTATATATTCGATAAAGAGGACCAGAAAATCCATAGACGATCACCGCAGAAAAAATCTGCGCAGTTAAAAGTTATTTGTCAGAAATGTTTGAACGATAATTTTAAACCTTCTCGAATGAAGGGTGCTAATCAATTTTTGAACTGTGACGAATATTTGGTCATTAGCAACAATCAACAATACATATTTCAAAAGATTAAACACTTTAAATTTCGTACTGAAGAGAAAGAAAAaccgaaaattaaaaaagaggAGTTTGTTAAGGTAGAAATAGGATCAGATGGTGAGATAGTAACTAAACCAATAGATAACGACGATGTTATTATTGTTGACAAAGCTAAGGATAGTGATAGCGATGTTGAGGTTGTAGAAACTGATCTAGACAAGATTATTGATAATTTGGATGAAGCGGACGAAGACGTGAAAGAATTTCTCGGGAAATATGAGTGTGATGCTCTTGAACCTAAAGTCTTGAAATGCAGGTTTTGCGAGCTCGTGTTTTCTAGCACAGCAGATGTTATAGCACACGGGAGAACTCATAAGCATGAACTAGAGGATTCAGATGTAGTCTACCCTTGTCCACTCTGTGACTATGGGTACCCAACTTACAAATGGTTGAGCGGTCACATAAAAGCGGCACACGAACATGTAAAATTTGAACGAAATCTCACTGAACAAGCATCAGGGAAGATTCAAACAACTTCTGAAATAGATGAACTAAAACCACATTCATTCAGTGATATGGAAAaagaagATCAATCATTGGAGAATGGCGGACAGAAAATTGAGTCAACGGAAACGGAAATGGTAATAAAAACAGAAGTCAAGACAGAATGTTTGAGCTCAGATGAAGAAATATGGATAGTTCAAGCTGCTGATGATGCAGCTAAAGGGAAGTGTGAAGATATCCTGGAGGTTTCTAACGTTGAGAACGAAGGAATGAAACTTACAAGTCATGTCGGTAATCAACTGTACCATAGTGAAGAGTCCACATCTTCGCTTAAGAAAGTTAAGAAGAGGAAGTGTGAAGATGAAGAAGACATCATACGTATACCTACTCAAGAAGATTTTATAAGGAGAGCTCAAGGAAGACCCCGTGTTATAGACACTTCTGATGTTcagAAACATCGCAAGAAGACCAAAGAGTTTCCCATTGCTCAGATAGTGACATGCCACAACTGTAACCAATCATTCACGTCTAAAGTTAGACTTAAGTTCCATATgcaATTCCACTCTTCCACCCCGATGTTGCCAGTCGAAGGGCATTACACCTGCACTGTATGTGGCCGAGTGTTCGGTCACGAGGCGGCTCTGTTTGACCACGTCCACTTCCAACACGAGAAGCGGAAACGGTGGCAATGTCCCGTCATTAGTTGTGGCAAGACCTTCCGACTGAGAGCGACGCTAACGAAGCACAGCCGAAGCCACACCGACACGCGCCGCTACGGCTGCCTCACCTGCGGGAAGCGGTTCCTGGACAAGCAGACCTTGGACGAACACTCCGTGACACATCTCCGGATTAAGCCGTACCAATGCCACATCTGCCTCAAGCAACTGACCCGCGTGTCCCGTCTGCGCATGCACGTCCGCGCGCACCAGCAGGAGCTAGCGCCGTCCCGCCTGCCCGCCTGCAGCCACTGCGCCCGCGCCTTCGCTAACATTGCACAGGCACAGGAACACGCATCAAAATCGAAGGAATGTAGAGATTCAGTTGAAATCGAAACTACTACGGAACCCGCGGTGAAAGACCCCGCGGTACAGCTGTCCCCCACTAGTGGGATAGTCAGACACACTATACAGGTTATTGAGTCCCCGCGGCGACCGCGTGTCCGCTACGAGGTCCCCAGCCCCGCGGGCCGGCCGCTGCTGCTGCAACTACCCCCCTTCGCACGCAGGCTGATACGTATCGTCGAGATAGAGAAGGCTTTCCGCTGCGAGTACTGTGAAGATGTATTCTACATAGAAGAGGGCTTGAATAAACATCGTGTGATCCACAAAGGTGTCAAGAATCCGTTTACTTGTCATATATGTAAAGTTTCATTTGCTACGTACTCTAGATGTACGACCCACAAGACGACGCACGGGTTCTACAAGCGCGCGGCGAGCGGGGCGGCGAGCGGAGCGGGCAGCGGGCAGCCACAGGCGGTGCTCGGCTATGGAGACTTTCCTACTGTCAAACATTTCCTCTGCGAGGACTGCGGCCGTTCATACCTCCATTGGACGTACCTACAGGTACATAGAAGAATGAAGCATCAAAACGAAAACttcataaataaatgtaatcagTGCGAAATGACTTTCCCAAACAGGTAA
- Protein Sequence
- MDSRVGNWSVLGYEIDLTSITRDQKVDLNDNAYQFLMKLDLNETDTVQFQEAIDSNGDQLYVLDDGTQIRASQIHFDNEDELLDLTLETLPFEQINQIDDEVDGTNFEDVNYKIVASPVPSTNTSPKHGFMTTVPFKLICNNTTGFEAQFTKYIEQSTKTYTTLNNAAKKNKSPRSLIKDNFKDKEFRYTREEILNILKDSPVTSIPYEVGDRKHVRKMDPTRMVQKSSVKTVDIEGLVIGDGGSKICFICGLNVIDKVYIFDKEDQKIHRRSPQKKSAQLKVICQKCLNDNFKPSRMKGANQFLNCDEYLVISNNQQYIFQKIKHFKFRTEEKEKPKIKKEEFVKVEIGSDGEIVTKPIDNDDVIIVDKAKDSDSDVEVVETDLDKIIDNLDEADEDVKEFLGKYECDALEPKVLKCRFCELVFSSTADVIAHGRTHKHELEDSDVVYPCPLCDYGYPTYKWLSGHIKAAHEHVKFERNLTEQASGKIQTTSEIDELKPHSFSDMEKEDQSLENGGQKIESTETEMVIKTEVKTECLSSDEEIWIVQAADDAAKGKCEDILEVSNVENEGMKLTSHVGNQLYHSEESTSSLKKVKKRKCEDEEDIIRIPTQEDFIRRAQGRPRVIDTSDVQKHRKKTKEFPIAQIVTCHNCNQSFTSKVRLKFHMQFHSSTPMLPVEGHYTCTVCGRVFGHEAALFDHVHFQHEKRKRWQCPVISCGKTFRLRATLTKHSRSHTDTRRYGCLTCGKRFLDKQTLDEHSVTHLRIKPYQCHICLKQLTRVSRLRMHVRAHQQELAPSRLPACSHCARAFANIAQAQEHASKSKECRDSVEIETTTEPAVKDPAVQLSPTSGIVRHTIQVIESPRRPRVRYEVPSPAGRPLLLQLPPFARRLIRIVEIEKAFRCEYCEDVFYIEEGLNKHRVIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRAASGAASGAGSGQPQAVLGYGDFPTVKHFLCEDCGRSYLHWTYLQVHRRMKHQNENFINKCNQCEMTFPNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -