Ibis012130.1
Basic Information
- Insect
- Idaea biselata
- Gene Symbol
- -
- Assembly
- GCA_958496205.1
- Location
- OY292398.1:369226-380199[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.049 3.6 8.9 1.3 2 19 495 512 494 515 0.96 2 11 0.00035 0.026 15.7 1.7 1 23 532 555 532 555 0.97 3 11 0.0076 0.56 11.5 1.2 3 23 562 584 560 584 0.90 4 11 0.11 8 7.8 0.0 2 21 635 654 634 655 0.93 5 11 0.00021 0.016 16.4 0.2 1 23 712 733 712 733 0.98 6 11 0.00011 0.0079 17.3 0.7 1 23 739 762 739 762 0.97 7 11 0.0042 0.31 12.3 3.5 2 21 778 797 777 798 0.93 8 11 0.01 0.77 11.0 0.6 1 23 804 828 804 828 0.99 9 11 0.0056 0.41 11.9 10.2 1 21 835 855 835 857 0.94 10 11 0.061 4.5 8.6 2.4 1 21 863 883 863 888 0.92 11 11 0.0041 0.3 12.3 3.0 1 23 894 917 894 917 0.96
Sequence Information
- Coding Sequence
- ATGCTATCCCCTCGTGATGATGAAGATGACGATACTCATCTGTGTATCAAATGTAATTCCACCATTGTCGGCTTGGACAACTACGTCAATCACAGAAAAGATAGATGCGGCAAAATTAAAGTTGAACCCAAAGATCTCCCTCCGATAGAGTCGTTAGAACCTGCCTACAGCCTCGGAGCAGATGTCTTCTTCCAATCCCTTGAGCTACAAAGCAGTGTCAAAAAGACTTCACTATCGAGACTGACCCCACCAATACCTATATCAAAAAGCAGCATTGATCGAAAGAGTTTGATCGTCGCATCAACGTCCAGAGAAACACGGATGAGTCCTCTAGAAACAAACCTAAGAGGAGAAGACTGGATTGGAGGCCATACATTAAGTAGCCATACGATCACTGGCAATGAAGACAACCAGACTAAACTCATCAATGCCGTTGCCAGCATAAGTGGAACTGCTAAGAAAGTACCAAATTCATATTCTATTGACTTTACAGATTATAAGCCGGACGATGAGAGTGACGAATCAGATGTGTCTGATGAAGACGATGACGAAGATCATGCTACTGGAGGAAAGTGGAAACCTCCACATAATTACACAGGAGGCAAATGGCGTCCTGACTCTCCTGAACATGACTGGGATGACCAAGAACACACTGCAACTTGGAAGTCTCTGTTACCAGAAGTAGATCGAGATGAAGACTACGATGCTCCTCCACCAGGACACACAAAAGGAAAATGGGTACCTGGAGCTAACGAGAAAACTCAGATCATGCAGACAACAATTCagacgaaaggttccgtacaatACTGGTGCGGTCCTTGCAACAGGCGACTCGGCTCACGAGCTATATATGACAAACACTTGAGATCTAGTTTACATTTAAAGAAGGTACTCCCTGAACATGAattggagttttcaggtcatTTAGAACCCTTAAAACTATCTGAAAAACGCATATCGAGACCTTCGAAGTTCGTAGACGGTGGAATCTACTCtcaaatagaaagaaagaagagaCAAAAAAGAGAGACAAAGATGACTGTCAAAATACAGGCAAAGAAAAGAAAGAGAAAGACGAATTTTGTACATTGTGCTGGTTGCAAATCTCGTGTCAGAGTTCACGTAATGGGAAAGCATCTTATTTCACATTATCACTTCAGGAAAGCAGCTGGAGTAACTAGTTCTGTGTACCAGCAACTAATTTTAGACAACATTGACGCCATCGTTCATCAATCCCCTTTTCAATGCAGCCCCTGTAAGTTCTACACCAACTGGATCGAGAATTTCATGCTTCATCTATGCTCTGATGAACATAAATCAACTTCTGAACTCATGGACGGTGTGTACTGGTGTTCGTTTTGCAAGTTCGAATGCGAAAGTTCTCAAGAAATATTCGATCATGTGTCCAGCTCGGATCATAGTGAAGTTGTCGCGGTTATCAACAGATCAATGCCAATTATCCTCAGAAAGAAGACAGTGCTGAAATGTGAAACTTGTTCAGAAATCTTTCGGTATAATATAGAACTCAAGAAACACTGTGAAAAGATGGCTCACCCTTTGTCACATACTGCAACTGACAGTTACCAAGATCTGCACAAATGCGAGCAATGTGGGGTCAAGTTTAAATCTTCTCTCACTTTAGCAGCTCATTTGAAATCCAAACATAAGCAGAAGTCTCATCTATGCCTCGTTTGCTCCAAGACCTTCGAAACAGCAGACGATGCAAGACGTCATCGCCAGACCACAGAACATAGGGTTAAACGGAAGCAAATTCTAATAGAACAGGGCCTAAGCGCCAAAGATTTGAGTAAAAGATGTCCTTATTGTCCAGGCGAGGTTGTGTTGAGGAATATTTTGGAATTGAAAGAACATTTGCTATCGTTTCATCCTGATACGAAAAAATCGTGTCCCAAATGTGGTATGGAGTTCATCCTCTCTCAAGAAGTAACGAGCCATGTCAGAGCAAACGCCTGTCAATTTCAAGAGGCCTACAACCTAAACTCCTCAGTCTTCTGGCGATGCAGTCAGTGCCTCTTCACAACGGACTCCCAAGCAGAGTGCTACTTTCACGAGATTTTACACACAACACCAATCAAACTACGGACTAAGTTAGAGGGTAAAACCGTGGAAAAGTACCCATGTCCGATTTGTGCCAAAATCTTCCGTAAGCCGTCTTTGCGTCAGCATCTAAGACAGCATACGTTTGAAAGACCGTTCGTTTGCAACATTTGTAGAGCCAACTTCACTCGGCAGACGAGCCTTTCAAACCATGTCAGGAACGAGCACGGGGACAACGTGAAGTTGCCGCAGTTGGAAAAGATAGACGAATGGCATTGCGATAAGTGTTTGAAGAGCTTTGCtaacaaAAGTCTCTTATCCCGTCATAGATGCTATTCGTCGGATAAAGTCTACAAATGTACGGTCGAGGAATGCTCGTACGTTTCGCCTAGCTCCTTGCAGTTTGCCAAacatCAACGGAAACATGGAATAAAGATTCAACGTCACAAATGTCCACAATGTGACTACAAATGCACGCAGTCAAGtcatttaaaacggcatttacAGTGTCACAAAGGGGACAAACCTTACTTTTGTCCACATTGTGCTTTCTCTTGCGGAAGTTTGgaAAATCTTCGAAAGCACGTCCTCCGTAGCGGCCGACATAACAACGTGTTTCTTTATCACTGCAATCATTGCGACTATAAGACCAATATGGCCTCCGAATTAAAAGTACATCTTGTAACTAGTCACGCTGAGCAGTATAACTCGAAGACTGCTTCAGAAGCTGCCAAAACTCACTTGATGAAGAAATCTTTAGCAGTAACCGTTACCGTAACTATAGATAAAAATGTCtccaattga
- Protein Sequence
- MLSPRDDEDDDTHLCIKCNSTIVGLDNYVNHRKDRCGKIKVEPKDLPPIESLEPAYSLGADVFFQSLELQSSVKKTSLSRLTPPIPISKSSIDRKSLIVASTSRETRMSPLETNLRGEDWIGGHTLSSHTITGNEDNQTKLINAVASISGTAKKVPNSYSIDFTDYKPDDESDESDVSDEDDDEDHATGGKWKPPHNYTGGKWRPDSPEHDWDDQEHTATWKSLLPEVDRDEDYDAPPPGHTKGKWVPGANEKTQIMQTTIQTKGSVQYWCGPCNRRLGSRAIYDKHLRSSLHLKKVLPEHELEFSGHLEPLKLSEKRISRPSKFVDGGIYSQIERKKRQKRETKMTVKIQAKKRKRKTNFVHCAGCKSRVRVHVMGKHLISHYHFRKAAGVTSSVYQQLILDNIDAIVHQSPFQCSPCKFYTNWIENFMLHLCSDEHKSTSELMDGVYWCSFCKFECESSQEIFDHVSSSDHSEVVAVINRSMPIILRKKTVLKCETCSEIFRYNIELKKHCEKMAHPLSHTATDSYQDLHKCEQCGVKFKSSLTLAAHLKSKHKQKSHLCLVCSKTFETADDARRHRQTTEHRVKRKQILIEQGLSAKDLSKRCPYCPGEVVLRNILELKEHLLSFHPDTKKSCPKCGMEFILSQEVTSHVRANACQFQEAYNLNSSVFWRCSQCLFTTDSQAECYFHEILHTTPIKLRTKLEGKTVEKYPCPICAKIFRKPSLRQHLRQHTFERPFVCNICRANFTRQTSLSNHVRNEHGDNVKLPQLEKIDEWHCDKCLKSFANKSLLSRHRCYSSDKVYKCTVEECSYVSPSSLQFAKHQRKHGIKIQRHKCPQCDYKCTQSSHLKRHLQCHKGDKPYFCPHCAFSCGSLENLRKHVLRSGRHNNVFLYHCNHCDYKTNMASELKVHLVTSHAEQYNSKTASEAAKTHLMKKSLAVTVTVTIDKNVSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00837026; iTF_00835060; iTF_00837942;
- 90% Identity
- iTF_00837942;
- 80% Identity
- -