Ibis005118.1
Basic Information
- Insect
- Idaea biselata
- Gene Symbol
- -
- Assembly
- GCA_958496205.1
- Location
- OY292394.1:58940900-58956861[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.62 45 5.5 0.4 1 23 239 262 239 262 0.94 2 12 0.0004 0.029 15.5 1.6 2 23 272 293 271 293 0.97 3 12 0.0068 0.5 11.6 2.2 1 23 297 320 297 320 0.98 4 12 0.0068 0.5 11.6 2.2 1 23 341 364 341 364 0.98 5 12 0.58 43 5.6 3.0 1 23 374 396 374 396 0.97 6 12 0.0015 0.11 13.7 1.1 3 23 402 423 401 423 0.97 7 12 0.0005 0.037 15.2 1.7 1 23 432 455 432 455 0.96 8 12 0.0019 0.14 13.3 0.2 3 22 462 481 461 485 0.93 9 12 0.00018 0.013 16.6 0.1 1 23 493 516 493 516 0.93 10 12 0.0015 0.11 13.7 0.6 3 23 524 545 523 545 0.92 11 12 0.00035 0.025 15.7 0.9 2 23 555 576 554 576 0.97 12 12 0.0057 0.42 11.9 1.3 2 23 583 605 582 605 0.95
Sequence Information
- Coding Sequence
- ATGGCAAATACCACCTCTTACACACCAAGATGTTCTACTTTCGAACATTTCGATAGACCGATATCCGAAAGTGTGTGTTTCTGTTGTTTATCCCAAAATGTGCCTGTTATAGATCCTTATCTTTGTTCTCACACGGAATTCATAGAAATTTATCTGGAGATTCATCATAACAACACGAATAAGCTACAGATGTGCTACACCTGCCACTATATGTTGAAGAAAATTGATGCATTTagaaaacaaatttataaatctTATAACCTATTGAGTGCTGATGAATTTCAGctAACAAGGCCAGTAAATAATTGGAAACTAATCAATGATTTTCAATATACTACAATATCAGAAGAAAATgaacaaataaaatatgattGTGTGCAACATGAAGATGCTAATAGTGACATTATTGACTCTCCCAAAGAAAGAGCTAGTCAAAGTAATGATGAGGATCAAAAATCAATCGATGTAAAAATCAAAGTGGAATCTTTATCAGACATAGAGGACGATTTACCTCTTATCTATAGAAAAGTAAAAAAGTCAAAATCGAAACGAAAAGTCAAGTCCAAAGTCAAAGTTAACCCCGGAAGTGAGAAAAAAAGGgaaactttgaataaaatgtatgaaggTAAAATATTGTTGGTTATTCTAACCCAAGAGGAGTTGGTAGAAGAGAAACAGATTGAGAGACAGAATATATCATTTATGAAATTGAAATATAAATGTGATGATTGTATCAAGGGATTTGATTTCGAGTTACCGTGGAAGACTCATATGGAGAAATTTCATTCCAAGaatacAAAACCTGATGCTATTGTTTGTGAATtttgtaaaactgtttttacCAACAAGAACACTTATAATATTCATTATAAAAGACATTTTCGACGgtaCGTGTGTTGTGAATGCAACAAGCGATCGAGGGACCTCCCCTCTCTCGCGTACCATTACAACACGAGGCACGTTCACCGCACCACCATACCGCTACACTACGACTGCACTGATTGTGACTTCACTACCGAgtacgtgtgtTGTGAATGCAACAAGCGATCGAGGGACCTCCCCTCTCTCGCGTACCATTACAACACGAGGCACGTTCACCGAGCCACCATACCGCTACACTACGACTGCACTGATTGTGACTTCACTACCGAttcggATCGGAAGTACAGATACCACAAACAGAAGCACAAAGCCCCGAAACTATGTGAAATATGTAACAAAAGTTTTGTTACGACGTCGTCATACAATTTTCATATgaaCAGCACGCACGCGCAACGCCCGCCCAGCGCGAGCTACAGCTGCTCCCAATGCGCGCGCCGCTACACGCGCAAGTCCAGCCTGCACGAGCACGCGCGCGCGGCGCACGCGGGCGCGCGCGCGCACTGCGCCGTCTGCGCGCGCTCCTTCGCCTCGCCGCACTCCTACATCGTGCATATGAGGACCGCGGCTGCTCATGTCACCGACGATGGTTACAGATTCATATGCAACGATTGCGGCAAGAAGTACAAATGGCGTTCGAATCTGATAGAACATATCGATTGGGAACatttgaaaaattacaaaaataggtGCATTGAATGCGAtaagGTGTTTCAGTCGAACAGGAGTCTGGTCAGGCATACGAAGATAATACATCAGAAACTTAAACCACCGAAGGACAAGATGTGTGACTTTTGTGGAAAAGGTTTTTCTACGCTAACAATACTCCGGAGCCACATCCGCCGCCACACCGGCGAGCGCCCGCTCCGCTGTCACCTCTGCGACGCGACATTCGCACACGACGCTGCCTTGTACAACCACAAACGATTAGTACATAAAGTTGATAGGAAGAGAGATATGGTCTAG
- Protein Sequence
- MANTTSYTPRCSTFEHFDRPISESVCFCCLSQNVPVIDPYLCSHTEFIEIYLEIHHNNTNKLQMCYTCHYMLKKIDAFRKQIYKSYNLLSADEFQLTRPVNNWKLINDFQYTTISEENEQIKYDCVQHEDANSDIIDSPKERASQSNDEDQKSIDVKIKVESLSDIEDDLPLIYRKVKKSKSKRKVKSKVKVNPGSEKKRETLNKMYEGKILLVILTQEELVEEKQIERQNISFMKLKYKCDDCIKGFDFELPWKTHMEKFHSKNTKPDAIVCEFCKTVFTNKNTYNIHYKRHFRRYVCCECNKRSRDLPSLAYHYNTRHVHRTTIPLHYDCTDCDFTTEYVCCECNKRSRDLPSLAYHYNTRHVHRATIPLHYDCTDCDFTTDSDRKYRYHKQKHKAPKLCEICNKSFVTTSSYNFHMNSTHAQRPPSASYSCSQCARRYTRKSSLHEHARAAHAGARAHCAVCARSFASPHSYIVHMRTAAAHVTDDGYRFICNDCGKKYKWRSNLIEHIDWEHLKNYKNRCIECDKVFQSNRSLVRHTKIIHQKLKPPKDKMCDFCGKGFSTLTILRSHIRRHTGERPLRCHLCDATFAHDAALYNHKRLVHKVDRKRDMV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -