Ibis004900.1
Basic Information
- Insect
- Idaea biselata
- Gene Symbol
- -
- Assembly
- GCA_958496205.1
- Location
- OY292394.1:56481718-56498687[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.13 9.7 7.6 0.2 1 23 248 271 248 271 0.96 2 12 0.031 2.3 9.5 0.4 2 23 280 301 279 301 0.95 3 12 4.3 3.2e+02 2.8 3.5 1 19 305 323 305 326 0.93 4 12 1.8e-05 0.0013 19.8 0.3 1 23 337 360 337 360 0.96 5 12 0.0053 0.39 12.0 1.0 2 21 365 384 365 385 0.92 6 12 0.00053 0.039 15.1 1.4 3 23 402 422 400 422 0.94 7 12 8.1e-06 0.00059 20.8 0.5 1 23 427 449 427 449 0.98 8 12 0.0066 0.48 11.7 5.0 1 21 458 478 458 479 0.96 9 12 0.00039 0.029 15.5 1.8 1 23 491 514 491 514 0.92 10 12 0.0024 0.18 13.0 0.3 1 23 520 543 520 543 0.96 11 12 0.008 0.59 11.4 0.5 3 19 558 574 556 575 0.91 12 12 0.02 1.4 10.2 0.8 1 23 588 611 588 611 0.97
Sequence Information
- Coding Sequence
- atgaacgaaatcaACATTAATATTGAGGGTTACAATGTAAACGGTATCTGTGTTGGTTGTTTGAACTATAATCGACGAATGTTTTACGATCAGGATGCGAAAGAAGTATTTCGAATTGTTGGGAATATAGATGTACCAGACGGGCTGAGTGTTCAGGTCTGCTGGGAATGTCTTGCCGCTGTGAAGTCGGTGATACGATTCCAGAAGCAGATTCAGAGCGCCTTTCATGCACTTATTACATATTCTAGGCAGCACACATTCCTCAATTCCCCGGAAGACTTGACTCACTACTCGTCCAATCGGCTCACCGCTTCCCACGTGCTACATGCCGTGGACATCGTGTGGACTGACGTGGACAGTGTCCCCACGGACAGTAAAGACTTGCTTGTCAAGGAGGAGGATGTTTTTGTTGATGAAGACACCCAATCATCAGTAAAACAAGAGCTGCCGTTTGAGTACTCTGACCACGAATTACCTATACAGTATGACAACGATTCCGAAGAGGACATACAGTTGTCTAAACTTAAAGACGAAAAGAAagagaagaaagaaaagaagaagggcaggaagaagaagaaacgacttaAAAAGGACCCAGAACCGGAACCAGAACCTACCCAAAAGGGTCGGAAACTAAAGAACCTGCCACCCTCAATAGTGACACTACACACTCTGACAGAAGAAGAAATGTGGATAGTTAGAAATAACGACGTCAATAGCGAAGAGTTCCGAAAACTTAAGTACAGATGTGACGACTGCATAATCGGGTTTAACTCTGAGAAGCTAATGGAATACCATATGAATGGAAAACATAAACCGAAATCGTCGTCAGCCCTCCAATGCGATATATGCAAAGCCTATTTCCTGACGAAGGACAATCTGTCTGTCCATCGGTCGTTGCATCTCTCATCttatagGTGTTCTCTGTGCGAGCACGTGACCACCCTCAAACGCAACATGTGTGAGCACGGGTGCGTCAAGACTGCAGCGGTCATAAACACCGAGCAGTTCCCTTGTGCAGACTGCGATAAGGTGTTTGCtTCGAAATCAAAGTTATCGTACCACAAGAACGTTGTGCACGCAGAGCGTCCTCAGTGCGATTGTTGTGGGAAGGTGTTCGCCAACAAGATGACGCTCAAGTACCATCTCaaAATATTACCACAGAACAAAGACGAGAAGCCAAAGGAGAAGTTATACATAAACTGCAAGGGATGCAACAAGGTGTTTCATTCCAAGAAGAGCTACAGAGCTCATGTtgtaATTCACGACGGGATAACCTATCCATGTCCGATTTGCGGTAAACAATTCCAGTGGAAGAGGAACCTCACCCGACACACCCGCGTCCATAAAGACCGAGCGAACGGCGCCGCACACGAGTGTCGTCAGTGCCGTAAACGCTTCGCTTCGAGAGACTGTCTCAAGAATCATCTTCGGTTTAGCAAAAAACATGCCGATAGATACTCCTTTAATCACGAATGCAACTACTGCGGCAAGAAATTCGCTACAAAATGGTGTATGGTTGACCATATAGACTGGGACCATTTGAAGCGAGTCAAGTACCAGTGCAGCGTGTGTTTTAAGGCATTTAAAACCGCTAAGATAATGGTAGCCCATATGAACAACATTCACGAGGGGAAAAAGAAAGATGATTCCACTGAAGGCGAGCATCTCTGTGATATCTGCGGGAAGTCTTACAAGACCGAGAAGCGCCTCAAAGGCCACGTATGGGCGATGCACACGACTCGGTCTACTGCGCGCAGCTACAAGTGCAAGCTGTGTCCCGCCACCTTCACGTGGCAGACCTCCGTCTACAAACACGTCAAGATGATGCACGACAACACCCGGACCAAGCCACCCCGAGTGAACGTATCGAGTGTGAAGAAACAGGAACAATTCCCACAAGTTGATATATCTTACTTTCACCTGCCGATCCCGGGACAGAACGTTGTATAG
- Protein Sequence
- MNEININIEGYNVNGICVGCLNYNRRMFYDQDAKEVFRIVGNIDVPDGLSVQVCWECLAAVKSVIRFQKQIQSAFHALITYSRQHTFLNSPEDLTHYSSNRLTASHVLHAVDIVWTDVDSVPTDSKDLLVKEEDVFVDEDTQSSVKQELPFEYSDHELPIQYDNDSEEDIQLSKLKDEKKEKKEKKKGRKKKKRLKKDPEPEPEPTQKGRKLKNLPPSIVTLHTLTEEEMWIVRNNDVNSEEFRKLKYRCDDCIIGFNSEKLMEYHMNGKHKPKSSSALQCDICKAYFLTKDNLSVHRSLHLSSYRCSLCEHVTTLKRNMCEHGCVKTAAVINTEQFPCADCDKVFASKSKLSYHKNVVHAERPQCDCCGKVFANKMTLKYHLKILPQNKDEKPKEKLYINCKGCNKVFHSKKSYRAHVVIHDGITYPCPICGKQFQWKRNLTRHTRVHKDRANGAAHECRQCRKRFASRDCLKNHLRFSKKHADRYSFNHECNYCGKKFATKWCMVDHIDWDHLKRVKYQCSVCFKAFKTAKIMVAHMNNIHEGKKKDDSTEGEHLCDICGKSYKTEKRLKGHVWAMHTTRSTARSYKCKLCPATFTWQTSVYKHVKMMHDNTRTKPPRVNVSSVKKQEQFPQVDISYFHLPIPGQNVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00836861;
- 90% Identity
- iTF_00836861;
- 80% Identity
- -