Ibis005190.1
Basic Information
- Insect
- Idaea biselata
- Gene Symbol
- -
- Assembly
- GCA_958496205.1
- Location
- OY292394.1:59940636-59967081[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00067 0.05 14.8 0.2 1 23 262 284 262 284 0.96 2 19 0.035 2.5 9.4 4.2 1 23 290 312 290 312 0.97 3 19 0.0013 0.098 13.9 0.3 1 23 318 341 318 341 0.93 4 19 5.4 4e+02 2.5 5.4 1 23 376 398 376 398 0.92 5 19 0.5 37 5.8 1.9 1 23 404 426 404 426 0.97 6 19 0.01 0.73 11.1 1.1 1 23 432 455 432 455 0.96 7 19 2.8 2.1e+02 3.4 4.4 2 19 462 479 461 484 0.91 8 19 0.0018 0.13 13.4 4.0 1 23 490 512 490 512 0.95 9 19 0.0013 0.092 13.9 2.7 1 23 518 540 518 540 0.98 10 19 0.00028 0.021 16.0 0.1 3 20 548 565 546 567 0.94 11 19 0.00067 0.05 14.8 0.2 1 23 789 811 789 811 0.96 12 19 0.035 2.5 9.4 4.2 1 23 817 839 817 839 0.97 13 19 0.002 0.15 13.3 0.6 1 23 845 868 845 868 0.93 14 19 0.5 37 5.8 1.9 1 23 931 953 931 953 0.97 15 19 0.01 0.73 11.1 1.1 1 23 959 982 959 982 0.96 16 19 2.8 2.1e+02 3.4 4.4 2 19 989 1006 988 1011 0.91 17 19 0.0018 0.13 13.4 4.0 1 23 1017 1039 1017 1039 0.95 18 19 0.0013 0.092 13.9 2.7 1 23 1045 1067 1045 1067 0.98 19 19 5.9e-06 0.00044 21.3 0.5 3 23 1075 1095 1073 1095 0.98
Sequence Information
- Coding Sequence
- ATGTCGAAGACAACAACTGTATGTAGAGCGTGTCTTGTGGACAATCTCACAATGTACCGCGTCACAGACTCTCCATACGAAGAGATTTATGAAAAATTATCCAATGCCAAGCTTGGCAAGGGTAATCTTCCGGAGACATTCTGCTACCTCTGCATAAACATGTTGAAGAAGTTCAACAAGTTTGCGGCACTCACGCAGGAGTCAAATGCCATACTCGAGCAGTGGTACAAAAATGAGATTGATTGTAAACCGAAGAAACATCAGCAATTCAAAATATCAACAACCTCCGTTGAGTACATTACTAGCAACATTACTTATGCAGAACAAAGTAAGGAAATTAAGATCAAAATTGAACCCGATGATGCAGAGGGATTAAACCAAGTCCAGTATACAGAATTCACCAACGAGTCTGATCCATATGCTGCTCCTGAAGAGACCGCGGACATAAATGTTGACGATCCCCAAGTCAAGGATGACGATTCTTTTACTGATGATCCAAAACCGGGGACTCCATCCGACGATGAGTTCGAGGTTCCCATCGTGAAGCTGGAGTCAAGGAAGCGGGTCAAGACTGAGAAGACACCGAAAGGTACGGCAGTCAGGACCAAGAAAACACCTGTTACTAAGAAATTTAAACGAGATCTTAAACAGACTCGAAAGACAGGGAAAATTCCGCGAGATTCTTGCGTTCGGAATGATTCTGGCAAACCAAACAACCATCGCCAAATACAAGAACAACGAGAAGATACTGCAAATGATAAGAAATCTTTGAAGTTTGAGAGTTACGAATGTCTTATCTGTAACCGAAAGTTTGCCAACAGACAAGTCTTGAGAAAACATGCTGCAGTGCATTCGAACCAAAAACCATTTGCCTGCGACCAGTGTGATTATAAGTGTCGCAAAGGAAGTAATATGAAGACACATAAAATGACGCACACTGGCGAAAAACCGTTTCTGTGTTTCATATGCGGTAATAAGTATACCAGGAAGAGCGTTCTTAAAGCCCATATCGATTCAGCTCATAAGGGAGGCGATACTCAAGCTTCTAATGAAGCCAAAACTACTGATGATTCTAAAAAAGTATTAGACAATATAGTTCAACCTATAAAACCTGTTGAAAATAGATATTCTTGCAACGTGTGCAGTTACAAATGTTCCTACAAGTATCAAATGAAATTCCACGAGTTAAGCCATACAAATAAATGGCCTTTTTCTTGCGACATGTGCAACTACAGGAACACTTCTCAAAACTTAGTGAAGCAGCATTTGAAAAATCACTACGATGAGAAAGAATTCCGATGTAGCATCTGTGATTTTAAAACGTTAAGAAAGTATAGCTTGGAGATTCACGTCCGGAGAATACATTTCGGTGAAAAACCTTTGTCTTGCGATAACTGTGATTATAAGTGTATTGAGAAAGGGCACATGAAAAGGCACTGTATGGCGGTGCATTCGAAAGAGAAGCCGTTTCTATGTCATGTTTGTGATTTCACTTGTTCGACGAAGGATGGTCTTAGTACCCATCTGAAGGTGCATAGTGGGGAGAAGAAATTTAAGTGTTCGACTTGTGGATATAAGTGTTTGAGAAATAGTAGTCTTGTAGCTCATGTGAGGACGCATACTGGCGAGAAACCATACGGGTGTAATGTCTGTGATCGGAGGTTTGCGCAGAAAAGTGCTCTGAACACTCATCTTGGCAAGGGTAATCTTCCGGAGACATTCTGCTACCTCTGCATAAACATGTTGAAGAAGTTCAACAAGTTTGCGGCACTCACGCAGGAGTCAAATGCTATACTCGAGCAGTGGTACAAAAATGAGATTGATTGTAAACCGAAGAAACATCAGCAATTCAAAATATCAACAACCTCCGTTGAGTACATTACTAGCAACATTACTTATGCAGAACAAAGTAAGGAAATTAAGATCAAAATTGAACCCGATGATGCAGAGGGATTAAACCAAGTCCAGTATACAGAGTTCACCAACGAGTCTGATCCATATGCTGCTCCTGAAGAGACCGCGGACATAAATGTTGACGATCCCCAAGTCAAGGATGACGATTCTTTTACTGATGATCCGAAACCGGGGACTCCATCCGACGATGAGTTCGAGGTTCCCATCGTGAAGCTGGAGTCAAGGAAGCGGGTCAAGACTGAGAAGACACCGAAAGGTACGGCAGTCAGGACCAAGAAAACACCAGTTACTAAGAAATTTAAACGAGATCTTAAACAGACTCGAAAGACAGGGAAAATTCCGCGAGATTCTTGCGTTCGGAATGATTCTGGCAAACCAAACAACCATCGCCAAATACAAAAACAACGAGAAGATACTGCAAATGATAAGAAATCTTTGAAGTTTGAGAGTTACGAATGTCTTATCTGTAACCGAAAGTTTGCCAACAGACAAGTCTTGAGAAAACATGCTGCAGTGCATTCGAACCAAAAACCATTTGCCTGCGAccagtgtgattataaatgtcgCAAGGGAAGTAATATGAAGACACATAAAATGACGCACACTGGCGAAAAACCGTTTCTGTGTTTCATATGCGGTAATAAGTATACCAGGAAGAGCGTTCTTAAAACCCATATTGATTCAGCTCATAAGGGAGGCGATACTCAAGCTTCTAATGAAGCCAAAACTACTGATGATTCTAAAAAAGTATTAGACAATATAGTTCAACCTATAAAACCTGTCGAAAATAGATATTCTTGCAACGTATGCAGTTTCAAATGTTCCTACAAGTATCAAATGAAATTCCACGAGTTAAGCCATACAAATAAATGGCCTTTTTCTTGCGACATGTGCAACTACAGGAACACTTCTCAAAACTTAGTGAAGCAGCATTTGAAAAATCACTACGATGAGAAAGAATTCCGATGTAGCATCTGTGATTTTAAAACGTTAAGAAAGTATAGCTTGGAGATTCACGTCCGGAGAATACATTTCGGTGAAAAACCTTTGTCTTGCGATAACTGTGATTATAAGTGTATTGAGAAAGGGCACATGAAAAGGCACTGTATGGCGGTGCATTCGAAAGAGAAGCCGTTTCTATGTCATGTTTGTGATTTCACTTGTTCGACGAAGGATGGTCTTAGTACCCATCTGAAGGTGCATAGTGGGGAGAAGAAATTTAAGTGTTCGACTTGTGGATATAAGTGTTTGAGAAATAGTAGTCTTGTAGCTCATGTGAGGACGCATACTGGCGAGAAACCATACGGGTGTAATGTCTGTGATCGGAGGTTTGCGCAGAAAAGTGCTCTGAATACTCACGTTAGACGGCATAGTCAGAAATAA
- Protein Sequence
- MSKTTTVCRACLVDNLTMYRVTDSPYEEIYEKLSNAKLGKGNLPETFCYLCINMLKKFNKFAALTQESNAILEQWYKNEIDCKPKKHQQFKISTTSVEYITSNITYAEQSKEIKIKIEPDDAEGLNQVQYTEFTNESDPYAAPEETADINVDDPQVKDDDSFTDDPKPGTPSDDEFEVPIVKLESRKRVKTEKTPKGTAVRTKKTPVTKKFKRDLKQTRKTGKIPRDSCVRNDSGKPNNHRQIQEQREDTANDKKSLKFESYECLICNRKFANRQVLRKHAAVHSNQKPFACDQCDYKCRKGSNMKTHKMTHTGEKPFLCFICGNKYTRKSVLKAHIDSAHKGGDTQASNEAKTTDDSKKVLDNIVQPIKPVENRYSCNVCSYKCSYKYQMKFHELSHTNKWPFSCDMCNYRNTSQNLVKQHLKNHYDEKEFRCSICDFKTLRKYSLEIHVRRIHFGEKPLSCDNCDYKCIEKGHMKRHCMAVHSKEKPFLCHVCDFTCSTKDGLSTHLKVHSGEKKFKCSTCGYKCLRNSSLVAHVRTHTGEKPYGCNVCDRRFAQKSALNTHLGKGNLPETFCYLCINMLKKFNKFAALTQESNAILEQWYKNEIDCKPKKHQQFKISTTSVEYITSNITYAEQSKEIKIKIEPDDAEGLNQVQYTEFTNESDPYAAPEETADINVDDPQVKDDDSFTDDPKPGTPSDDEFEVPIVKLESRKRVKTEKTPKGTAVRTKKTPVTKKFKRDLKQTRKTGKIPRDSCVRNDSGKPNNHRQIQKQREDTANDKKSLKFESYECLICNRKFANRQVLRKHAAVHSNQKPFACDQCDYKCRKGSNMKTHKMTHTGEKPFLCFICGNKYTRKSVLKTHIDSAHKGGDTQASNEAKTTDDSKKVLDNIVQPIKPVENRYSCNVCSFKCSYKYQMKFHELSHTNKWPFSCDMCNYRNTSQNLVKQHLKNHYDEKEFRCSICDFKTLRKYSLEIHVRRIHFGEKPLSCDNCDYKCIEKGHMKRHCMAVHSKEKPFLCHVCDFTCSTKDGLSTHLKVHSGEKKFKCSTCGYKCLRNSSLVAHVRTHTGEKPYGCNVCDRRFAQKSALNTHVRRHSQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -