Ibis000173.1
Basic Information
- Insect
- Idaea biselata
- Gene Symbol
- -
- Assembly
- GCA_958496205.1
- Location
- CAUEGO010000036.1:1600-4190[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0007 0.051 14.7 7.8 1 23 227 249 227 249 0.97 2 14 0.083 6.1 8.2 3.0 2 23 256 277 255 277 0.95 3 14 0.0024 0.17 13.1 8.4 1 23 282 304 282 304 0.97 4 14 0.00035 0.026 15.7 1.7 2 23 311 332 310 332 0.96 5 14 0.00048 0.035 15.3 0.9 1 23 338 361 338 361 0.96 6 14 0.00012 0.0086 17.2 2.6 1 23 387 409 387 409 0.98 7 14 0.00039 0.029 15.5 3.7 1 23 417 439 417 439 0.99 8 14 0.019 1.4 10.2 3.9 1 23 445 467 445 467 0.96 9 14 4e-05 0.003 18.6 2.5 1 23 473 495 473 495 0.96 10 14 0.0015 0.11 13.7 2.7 1 23 501 523 501 523 0.98 11 14 0.021 1.5 10.1 4.1 1 23 529 551 529 551 0.97 12 14 0.00042 0.031 15.4 2.6 1 23 555 577 555 577 0.99 13 14 0.0021 0.16 13.2 1.0 1 23 583 606 583 606 0.94 14 14 0.75 55 5.2 2.6 1 23 636 659 636 659 0.81
Sequence Information
- Coding Sequence
- ATGTGTGCTCTGTCGGCGTGTAGAGTGTGTCTAGCGAGTGACCGCGAGATGTACCGTCTCTCGAACACAGCGCTCCAGGAGACGTACGAAAGAGTAACCAGCGAAATGCTGGTGTTAGAGGGGCGGCCGTCGTGCGTGTGCGGCGTGTGCCTAGCGGCGCTGCGCCGATGTCGCCGGTTCATTGACACAGCACGGAAAGCCAACGACGCGCTGGACCGGTGGCTCCAGGACCAGGATAATACATTGAAGCTAATTGAGCAACCACTGTTCTCATTCAAGCAAACTCCTACAGAAACCCTAGACATCATATGTGATGAGGGCAACTGGCAGTCACAAGTCAAACGGGAGAGAGACACACCAGGTGACAACACTGTTTATCTGAAAAACAAAGACTCTTCTGATAATGAAGACTGTGTCCTGGCAACCAATATCAAATGTGAAGTCACCAGTGAGGATGAAAATGACTACAGACAATTGACTGAAAACCACAATAGAAAAGTGATCAAGTTTCAATATGTCAATATACCAGAAGAAATGATAAATGTTGAAATAGGCACAAATACATCACATGATGTTAAACCTGATGTCTGGAATAACATAAACAATCTTGATACTGCCCCTAGCACATCCTCATCGGGAAGAGATTTTACGATGTCATCGAGGGAGGATATTCCTATGTTTGCATGTAACAAGTGTAGTTACAGATGTGaacaaaaacacaatttaaaacGACATCTGAAGACTCACACTGATAGGAAACCATTGGAGTGTCcaaaatgtgattttaaatGTAGACTAAAGAGGAGTTTAACATTGCATTCACTTAGCCATGATGCAAAACCCTttgcatgtgataagtgtgattacAAAAGTGAACACAAACACCATTTAAAACGACACCAAATGACTCACACCAATGAAAAACCACTGGAGTGTAAtcaatgtgattataaatgtatacAAAGAGGtactttaaaaaggcatttaCTTGTCCATACTGGTGAGAAGCCATTTGCATGTGATAAGTGTAATTTTAGAAGCAGTTACAATGCCAATTTACTAAGGCATATGATACGGAATCATAGCTGCAACCAATTGGTCAATTTTATAAGTAATCAAGAGAGCACACAAGACACACAGTTGAAAAATGAATCGCAGTTTGTATGTGATCAGTGTGGTagtaaatttaagaaaaaatactcATTTGAGCGGCATTTATTGAGGCATACTAGTGGAAATGAAGATCTATTTAAGTGTAATCTGTGTGATCGTAGAtgccaaaataaaaacaaattaatagcACATTTACAAACTCATACCGATGAAAAACCATTTGCATGTGACAAATGTGAATTCAAATGTAGACAAAAAGCCACTTTACAGCAGCATTCAATgagacatactggtgaaaaaccatttctttGTGACATGTGTGATTATAAAAGTTCTCAAAAAGCCAATTTAATACACCATATGAGAAAACACACTGGTGAAAAACCCTTTGTGTGCCATATTTGTGATTCGAAATTTTTCCTCAAAGTGCAATTGAAACAGCATTTAATGAGTCATACAGGTGAAAAGCCATTTGCATGTAATCAGTGTGAATATAAAACTACTACAAAAGGTAGTCTTAAATGTCATTTACGTACTCATGAGAAACCTTTCAAATGCCATATTTGTGATTTTGGGGGTACTGATAGAAGGCAACTGAAACAACATTTGATGCGTCATACTGGCGAAAAGCCGTTCTTATGTGACAGGTGCGATTATAGAACTATTAGGAAAGATTACTTGGAACAACATATACTAAAGAAACATTCTGATGGGGGGATTCAAAATATAGGCCTTAACCATGCAGTGGTACCAAAAaggctgaaaataaaaataaatactggtGAGAAGCCGTTTTCGTGTGACAGGTGTTGTTATAGAGCTTTTAGGAAAGATTACTTAGAACAACATATATTGAAGATTCATACTGCTGCGGAGGGAGGCCTtagccctgcagtgggacaaaatatgGTGAAGATACAAACTGTTAAAGAGGAAAGCTTTAGCCCTGAAGTGgaacaaaatatattaaagatCCATACGACTGAGGATGGAGGCCTTAGCCCTGCAGTGCGACAAAATATATTGAAGATCCATACTGCTGAGGACGGCAGCCTTAGCCCTCCAGTTGGACAAAATATAGTAAAGATCCATACCGCTGAAGACGAACACCTTAGCCCTGCAGTGGAACAAAGTAAGCCAAAAATGATACCTGGACTTACACCAATAATATTGCGAAAAAACTAG
- Protein Sequence
- MCALSACRVCLASDREMYRLSNTALQETYERVTSEMLVLEGRPSCVCGVCLAALRRCRRFIDTARKANDALDRWLQDQDNTLKLIEQPLFSFKQTPTETLDIICDEGNWQSQVKRERDTPGDNTVYLKNKDSSDNEDCVLATNIKCEVTSEDENDYRQLTENHNRKVIKFQYVNIPEEMINVEIGTNTSHDVKPDVWNNINNLDTAPSTSSSGRDFTMSSREDIPMFACNKCSYRCEQKHNLKRHLKTHTDRKPLECPKCDFKCRLKRSLTLHSLSHDAKPFACDKCDYKSEHKHHLKRHQMTHTNEKPLECNQCDYKCIQRGTLKRHLLVHTGEKPFACDKCNFRSSYNANLLRHMIRNHSCNQLVNFISNQESTQDTQLKNESQFVCDQCGSKFKKKYSFERHLLRHTSGNEDLFKCNLCDRRCQNKNKLIAHLQTHTDEKPFACDKCEFKCRQKATLQQHSMRHTGEKPFLCDMCDYKSSQKANLIHHMRKHTGEKPFVCHICDSKFFLKVQLKQHLMSHTGEKPFACNQCEYKTTTKGSLKCHLRTHEKPFKCHICDFGGTDRRQLKQHLMRHTGEKPFLCDRCDYRTIRKDYLEQHILKKHSDGGIQNIGLNHAVVPKRLKIKINTGEKPFSCDRCCYRAFRKDYLEQHILKIHTAAEGGLSPAVGQNMVKIQTVKEESFSPEVEQNILKIHTTEDGGLSPAVRQNILKIHTAEDGSLSPPVGQNIVKIHTAEDEHLSPAVEQSKPKMIPGLTPIILRKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -