Ibis026692.1
Basic Information
- Insect
- Idaea biselata
- Gene Symbol
- ECU03_0790
- Assembly
- GCA_958496205.1
- Location
- OY292406.1:14067936-14071274[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.69 51 5.3 0.1 2 23 38 60 37 60 0.93 2 15 0.63 46 5.4 1.8 1 23 83 105 83 105 0.97 3 15 0.00071 0.052 14.7 0.2 1 23 109 132 109 132 0.95 4 15 0.00032 0.023 15.8 1.7 1 23 137 160 137 160 0.98 5 15 0.017 1.3 10.4 0.5 2 23 169 191 168 191 0.94 6 15 0.0022 0.16 13.2 0.2 3 23 268 289 266 289 0.92 7 15 0.0037 0.27 12.5 0.3 2 23 314 336 313 336 0.96 8 15 0.099 7.3 8.0 1.4 2 23 360 381 359 381 0.94 9 15 1.7e-06 0.00013 23.0 1.0 1 23 385 407 385 407 0.98 10 15 0.086 6.3 8.2 2.1 1 13 412 424 412 426 0.93 11 15 0.00012 0.0085 17.2 6.2 2 23 444 466 443 466 0.97 12 15 5.2e-08 3.8e-06 27.7 0.8 1 23 473 496 473 496 0.97 13 15 0.005 0.37 12.0 1.5 1 23 502 524 502 524 0.93 14 15 0.0028 0.21 12.8 0.2 1 20 529 548 529 551 0.95 15 15 0.0014 0.1 13.8 2.0 1 23 557 580 557 580 0.97
Sequence Information
- Coding Sequence
- ATGAAAGCGCACGTAACTGAGGTACATTATGAAGAAGATAACTTTATCGAAAAGTATAAGAGATTAACAGATATAGACTCTCTTGCTGTAAAAATCGACATCACAGATTTAACTTGCTCCATATGCGAAGCCAATATGGAGTACGTATCTAATCTAAAAGAACATTTGACGAAAGAGCACGATATAGTATTTTTTACCGACGTAAAAGATTATTTCGTAGAATTCAAATTGCCTTCGAATGGAGTTTTCATTTGTGTTTTCTGCAATTCCAACTACGAAACTTACACATCGATGAGACAGCATTTGTCTAAACATTATAACAACTACGTCTGCGAGATTTGCGGTGTTAGTTTTGTCAACAAAAATACAAGAAGAATGCATGTTCAAAATCTGCATAATAGATACTCGTACAAATGCTCTACTTGCAATAAAATATTCTCGAACAAGGCGGCTAAATTCAGTCATGAGAAAACGGTTCACCAAAAAGAAGCTAGATTTAAATCGAAATGTCCGTTCTGCGACGCTGAATTCACCGAATATTATCAACGCAATCGACATTTATTACAAGAACACAAGACTAAGGCAGCAAACTACAACTGTAATGTTTATCAATTGACGAAGAAAAAGTCAGCGAGACCTCTAAAAATTACGCTCAAGAAAGCGCTTGGCTTAAAAACCATATCAAAAGATATGACATTGCAATATCCATCTGAACTAGGGAAACTTAAAACGAACATTGAGAATGTATTACGTAACTCAAACTGTACCCCGTTtcttaataaaacaatatttggtATTGACTGCGCTTACTGTAAGCAAACATTTAAAACCATACAAGAATTAAGATCTCATGTTAATGATGCGCATAAAAACGTAACATTGTATAAAAAGAAGATAGATCAGAACAATCTGTGTTATAAAGTTGATATAACAGACTTGAAATGCACTATTTGTGATAAGAATGTTAATTTAATTGTCAATCTGAAAGATCACCTGAAAAAGGAACATAATGTCAAGTTTTATTCCGACGTAAAAGACTATATTCTTGAATTCAAGTTGACTACTGATGAATTATTATGTTGCGCTGTCTGCAATTCCACGTATGAAACATTTAAAATGCTACTCCAACATATGAACGGACATAACAGAAACTATATCTGTGATGTATGCGACATGggatttgtaaataagtataaattgCAAAAGCACAGACGAACCCATGAAGTAGGAAGCTTCAAGTGTTCCTTTTGCGATAAAATTTTCACTACTAAAGTTAGGAAAGTATGCCATGAGAAATACACGCACGCTACTAAAGCCAGATATAAAACGAAATGCCCTCACTGTGAAAAGACGTTTACAAATTACCATCAGAGAAACACGCATATGCGTTCGGAGCATAACACAGCTGCagctaattataaatgtaatatatGCGATAAAAAATTTACAATGAAATCTGATCTCACTGCTCATATACGTGAGTTACATTTGATGGAGAAAAATCACGTCTGCTCAGTTTGCAACGAAGGATTCTCGTCTAAACGTCGCCTACAGGAACATAGCGTTAAACACGCTGAAAGAACCTACAAATGTGCTGTCTGCCTAAAAGGATATGCTCGGAAGAAAACCCTGGAAGATCACATGTGGATACATAATGATGATAAAAGATTTAAATGTAGGATTTGTGGTTCTGCTTTCGTTTATAAATGCGGGTTGAAGAGTCATTTGCTATCTACTCACGGTTTAAGTATGGAGCAGTATGAAGCATCTCAAACGGAATTGGTGAAACCAACTGAACATACATAA
- Protein Sequence
- MKAHVTEVHYEEDNFIEKYKRLTDIDSLAVKIDITDLTCSICEANMEYVSNLKEHLTKEHDIVFFTDVKDYFVEFKLPSNGVFICVFCNSNYETYTSMRQHLSKHYNNYVCEICGVSFVNKNTRRMHVQNLHNRYSYKCSTCNKIFSNKAAKFSHEKTVHQKEARFKSKCPFCDAEFTEYYQRNRHLLQEHKTKAANYNCNVYQLTKKKSARPLKITLKKALGLKTISKDMTLQYPSELGKLKTNIENVLRNSNCTPFLNKTIFGIDCAYCKQTFKTIQELRSHVNDAHKNVTLYKKKIDQNNLCYKVDITDLKCTICDKNVNLIVNLKDHLKKEHNVKFYSDVKDYILEFKLTTDELLCCAVCNSTYETFKMLLQHMNGHNRNYICDVCDMGFVNKYKLQKHRRTHEVGSFKCSFCDKIFTTKVRKVCHEKYTHATKARYKTKCPHCEKTFTNYHQRNTHMRSEHNTAAANYKCNICDKKFTMKSDLTAHIRELHLMEKNHVCSVCNEGFSSKRRLQEHSVKHAERTYKCAVCLKGYARKKTLEDHMWIHNDDKRFKCRICGSAFVYKCGLKSHLLSTHGLSMEQYEASQTELVKPTEHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -