Ibis026269.1
Basic Information
- Insect
- Idaea biselata
- Gene Symbol
- -
- Assembly
- GCA_958496205.1
- Location
- OY292406.1:9817952-9824550[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.002 0.15 13.3 0.9 1 23 47 70 47 70 0.97 2 27 2 1.5e+02 3.8 0.7 3 23 98 118 96 118 0.93 3 27 0.02 1.5 10.1 0.7 1 23 140 162 140 162 0.95 4 27 0.0023 0.17 13.1 2.0 1 23 166 189 166 189 0.92 5 27 0.0052 0.39 12.0 1.8 1 23 199 222 199 223 0.94 6 27 0.98 72 4.8 2.5 1 23 272 294 272 294 0.96 7 27 0.088 6.4 8.1 0.1 3 23 320 341 318 341 0.95 8 27 0.003 0.22 12.7 2.2 2 23 364 385 363 385 0.97 9 27 2.6e-05 0.0019 19.2 2.6 1 23 389 411 389 411 0.97 10 27 1.2 88 4.6 0.0 1 23 416 439 416 439 0.93 11 27 0.015 1.1 10.6 2.8 1 23 445 468 445 468 0.94 12 27 0.029 2.1 9.6 0.5 1 23 474 497 474 497 0.95 13 27 1.4 1e+02 4.3 0.1 2 23 589 611 588 611 0.92 14 27 0.00099 0.073 14.3 2.9 1 23 633 655 633 655 0.95 15 27 9.2e-05 0.0068 17.5 0.0 3 23 661 681 659 681 0.97 16 27 0.00026 0.019 16.1 1.0 1 23 689 711 689 711 0.98 17 27 0.011 0.78 11.0 2.3 1 23 716 739 716 739 0.94 18 27 0.21 16 6.9 1.7 1 23 745 768 745 768 0.97 19 27 9.2e-06 0.00068 20.7 0.4 1 23 774 796 774 796 0.97 20 27 0.012 0.86 10.9 0.5 1 23 937 959 937 959 0.98 21 27 0.00071 0.053 14.7 0.7 2 23 964 985 963 985 0.97 22 27 0.024 1.8 9.9 1.2 1 23 993 1015 993 1015 0.97 23 27 0.00025 0.019 16.1 0.6 2 23 1021 1043 1021 1043 0.97 24 27 0.27 20 6.6 2.0 1 23 1052 1075 1052 1075 0.96 25 27 0.00033 0.024 15.8 0.2 3 23 1084 1104 1083 1104 0.97 26 27 8e-07 5.9e-05 24.0 1.4 1 23 1110 1132 1110 1132 0.99 27 27 9.6 7.1e+02 1.7 0.3 1 9 1138 1146 1138 1147 0.89
Sequence Information
- Coding Sequence
- ATGCGTAGACGTAGACGAGCAGAGTACGATCTGCCGGAGGAATCTCCGAAGAGGATCACCAAGACAATGATGAGGAGAAATGCAATGACGCTTCTCGAATGTTCTACGGCCTGGGCTTTTAGATGGTACCACGGCGCTTTTTACTGCTCCTATTGTGATACTAAGTTCGTAGACACGCAACCATTAAGAGATCACGTTAAAAAAGACCACCTAAACGAGTCACCTTCTGAAATAATCTTCTCGAAACTTAAAGAGAACAACATGGTGAAGATAGACGTAGAAGATGTCTGCTGCAGGTTCTGTAACGTTGCGCTAAATAGCGTTAAAGAGTTGAAAGATCACATAGTTAGTCATGGCAGGTCTGTGAATGAAGACTATAGTGACGGGGTATTGCCATTTAGGCTAAATGATGATGGATATTTGTGCCAATTGTGCTCTTTGCGCTTTAATTCCTTCCCTAAATTGAATGAACATATGAATGAACACTATAGAAATTACGTATGTGACACTTGTGGGAAAGGATTTGTATCTAAAACTCGGTTTAGGACACACACCCACGATGGGCACCTAAGCTATTTATACGTTAAAGGTAGTTTCCCGTGCAAGCTCTGCGGTGAAGTTTTCAGTACTCGAACGCTTAAAGCGAATCACAGATACAAAATCCATCATCAAGGGCAGCATGATGGTGCCAGCCAGACGGTCGGATCAAAATTGGTATGGAAAAGAAAACGCAGAATAGCAGAAGATAAAGCTAACGCTGCTTTGATCATTGAGTATTCAAACGCGGTCGCGTTTCGGTGGCAGCGCGGGAAATTCATGTGTGCATACTGTCCCAAAATTTGTATCAGTATCCACGAGACCAGATCACACACTGAATCTCATAACAAACTTGACTTATTTCAAAACCCACAAGTGCGACAAATCTTTCCACTGAAAGTCGATATATCCGATCTGGCTTGTACAATATGCGATCtcaaaataagtaatattattGACTTAAAATCACATTTAACGACTGCTCATGAAATAGCTATCGATAGTGCATACACTGACGGTCTCATACCGTTCTCTTTATCTGACAAAGACTTAAAATGTGCCGTTTGCGATCTTCATTTCAATAGATTCATGACTCTATTTGTTCATATGAATAAGCATTATCCGAGTCACGTTTGTGATACATGCGGGAAGGCTTACTCCAACCAGCATAAGTTGAGGGCTCACACGGCAACGCATGAAACAGGTGATTTTATCTGTAGCCTATGTGATGCTGTCTTACCGAATCTCATTGCGAGGAGAAGGCATATAAACGACATTCATGGTCCAAAACAGAGGTACAGGTGTCCAATATGCGATGAGCACTTTGATTCCTTCCACAGTCGCATGAAACATTTAGACAATATTCACGGAGAGAAAACTGAGTATAAATGTGGATATTGTCCAGCAGTGTTCATCAGTTGCACGTCGAAATATGCTCATATTCAAGGTGTCCATTTAAGGAagcgtaaaaggcTCAACAACCTCGATATGAAATGGAGATCGATTCGCAAGCGTTACGATCATAGGGACAATGCCGCTATGCTTGTCGAATGCTCAAACGTAACTCCATTCAAATGGAAGAGCGGATGCTTCATTTGCGCTTTCTGCCCTCTATCCTCAGCAGACTTTGATGTCATAAAAGAACATATGGCAACCAAACCGCATAAAATAAATAGCGTGACAAGTTCGCGTAATAAAATTTTCCTAAAGGTAGAAGTAACTGATCTAAGATGCGAGCTCTGTTCCAAAAATATTCCAGACATAGAGGAACTGTTCGAACACTTAATAGAAAAACACGATAGGCCCTTAATTAGAGAATACGGTGTTGGCGTTATGCCCTTCTTACTAACGGGTTCAGAATATAGTTGCATAAAATGTGACGAGACTTTTAAACACTTTACTAACTTGAATAGGCACGTCAACATACACTATCCAAATACTATCTGCCCATTGTGCGGGAAACCGTTCGCTGATTCGAATAGAATGGAAGCTCATATGAAGATACATGAAACAGAGGCGAACGAGCAGTTCAAATGTCCGAGATGTGATGAGACTTTTCCTACGAGATACGAAAAGAACAAACATGTCGCTAAGCACAATACTCTCAGACATCGTTGTCCATACTGCAGTGAAGCATTTAAAAGCTACTCTTCTAAATTGATTCACTTAAAAGATTTTCACGATAAGAAAATCAAGTATCCATGTAACTTTTGTTCGGCCGTTTTCGGGATGTGTAATCAGAGAACGAAACACATACGCCAAGTCCATATAAAAGAGAAGACATTTGCTTGCGAACTCTGTCCTTACGCTTTTGTGACGCATTCTCAGCTACGAGCTCATATGATTAGGCATGGAGGGGAAAGAAAATACCAGTGTCAAATATggccCACCAACCTCGATTTGAAATGGAGATTGGTTCCCAAGCGTTTCGATCATAGGGACAATGCCGCTATCCTCATAGACTGCTCAAACGTCACTCCATTCAAATGGAAGAGCGGATGCTTCTTGTGCGCTTTCTGCTCTCTATCCTCAGCAAACTTCGATGTCATAAAAGAACATATGTTGACCAAGCCGCATAAAACGGATTCAGTGACAAGTCCTTATAACAAAATCTTTCTCAAAGTAGATGTAACTGATCTTAAATGCGAGCTGTGTTCCGAAAATAAACCGGACATCGAAGAGTTGTTTGATCACTTAACAGAAAAACACGGTAGGCCATTAATGCGAGAATATGGTATAGGAGTTATGCCCTATTTTCTGACAGGGGCGAAGTATAATTGTACAAAATGTAATGATATTTTTAAAGACTTCATCGCCTTGAACAAGCACGTTAATATACACTATCCTAATACTGTCTGCTCCCTATGCGGAAAACCGTGCGCTGATTCTCAAAGATTAAAATCGCATATGTTGATACATGAAACAGAGACCAACCAGCAGTTTAAGTGTCCGAGATGTAATGACACTTTCCCTACGAAAAAAGAAAGGAACCAACATGTTGCTAAGCACACTACTTTCAGAAATCGATGTCCATACTGCGGCGAAGCCTTCAAGAGTTACTCTACAAGATTGATTCACTTAAAAACTTTTCATGCTGATAAGATGCCAGAAAAAAAGTACCCTTGTCACTTATGCTCGGCTGTTTTTGGAATGTACAATCATAGAACGAGACACATAGACCGAGTTCATTTATTAAAAGAGAAGCCGGTGGCTTGCGAACTCTGTCCTTTCACTTTTGCGAACAAGGCGCAACTACGCTATCATATGGTTAAGCATGGAGGGGAAAGAATATACCAGTGTCAAATATGTAAGAAGGCATATGCTCGAAAGAAAACGTTACGCGAACATATGCGTATTCACGAAAACGATAGACGATTTGTGTGCACGTATTGTAGTAAAGTGTTATAA
- Protein Sequence
- MRRRRRAEYDLPEESPKRITKTMMRRNAMTLLECSTAWAFRWYHGAFYCSYCDTKFVDTQPLRDHVKKDHLNESPSEIIFSKLKENNMVKIDVEDVCCRFCNVALNSVKELKDHIVSHGRSVNEDYSDGVLPFRLNDDGYLCQLCSLRFNSFPKLNEHMNEHYRNYVCDTCGKGFVSKTRFRTHTHDGHLSYLYVKGSFPCKLCGEVFSTRTLKANHRYKIHHQGQHDGASQTVGSKLVWKRKRRIAEDKANAALIIEYSNAVAFRWQRGKFMCAYCPKICISIHETRSHTESHNKLDLFQNPQVRQIFPLKVDISDLACTICDLKISNIIDLKSHLTTAHEIAIDSAYTDGLIPFSLSDKDLKCAVCDLHFNRFMTLFVHMNKHYPSHVCDTCGKAYSNQHKLRAHTATHETGDFICSLCDAVLPNLIARRRHINDIHGPKQRYRCPICDEHFDSFHSRMKHLDNIHGEKTEYKCGYCPAVFISCTSKYAHIQGVHLRKRKRLNNLDMKWRSIRKRYDHRDNAAMLVECSNVTPFKWKSGCFICAFCPLSSADFDVIKEHMATKPHKINSVTSSRNKIFLKVEVTDLRCELCSKNIPDIEELFEHLIEKHDRPLIREYGVGVMPFLLTGSEYSCIKCDETFKHFTNLNRHVNIHYPNTICPLCGKPFADSNRMEAHMKIHETEANEQFKCPRCDETFPTRYEKNKHVAKHNTLRHRCPYCSEAFKSYSSKLIHLKDFHDKKIKYPCNFCSAVFGMCNQRTKHIRQVHIKEKTFACELCPYAFVTHSQLRAHMIRHGGERKYQCQIWPTNLDLKWRLVPKRFDHRDNAAILIDCSNVTPFKWKSGCFLCAFCSLSSANFDVIKEHMLTKPHKTDSVTSPYNKIFLKVDVTDLKCELCSENKPDIEELFDHLTEKHGRPLMREYGIGVMPYFLTGAKYNCTKCNDIFKDFIALNKHVNIHYPNTVCSLCGKPCADSQRLKSHMLIHETETNQQFKCPRCNDTFPTKKERNQHVAKHTTFRNRCPYCGEAFKSYSTRLIHLKTFHADKMPEKKYPCHLCSAVFGMYNHRTRHIDRVHLLKEKPVACELCPFTFANKAQLRYHMVKHGGERIYQCQICKKAYARKKTLREHMRIHENDRRFVCTYCSKVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -