Ibis026268.1
Basic Information
- Insect
- Idaea biselata
- Gene Symbol
- -
- Assembly
- GCA_958496205.1
- Location
- OY292406.1:9802806-9817569[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.6 44 5.5 0.1 2 23 179 201 178 201 0.92 2 18 8.1e-05 0.006 17.7 2.2 1 23 223 245 223 245 0.98 3 18 2.8e-05 0.0021 19.1 0.0 3 23 251 271 249 271 0.96 4 18 0.0018 0.13 13.5 0.9 1 23 279 301 279 301 0.98 5 18 0.004 0.29 12.4 3.4 1 23 306 329 306 329 0.97 6 18 0.013 0.96 10.7 0.9 1 23 338 361 338 361 0.96 7 18 0.0001 0.0073 17.4 0.6 1 23 368 390 368 390 0.96 8 18 5.3e-07 3.9e-05 24.6 1.4 1 23 396 418 396 418 0.99 9 18 0.15 11 7.4 0.6 1 13 424 436 424 437 0.91 10 18 0.6 44 5.5 0.1 2 23 523 545 522 545 0.92 11 18 2.8e-05 0.0021 19.1 2.2 1 23 567 589 567 589 0.98 12 18 7.9e-05 0.0059 17.7 0.1 3 23 595 615 593 615 0.97 13 18 0.0024 0.17 13.1 0.9 1 23 623 645 623 645 0.98 14 18 0.0019 0.14 13.4 3.6 1 23 650 673 650 673 0.97 15 18 0.13 9.7 7.6 0.8 1 23 682 705 682 705 0.96 16 18 0.0016 0.11 13.6 0.2 3 23 714 734 713 734 0.97 17 18 5.3e-07 3.9e-05 24.6 1.4 1 23 740 762 740 762 0.99 18 18 1.4e-05 0.0011 20.1 5.9 1 23 768 790 768 791 0.96
Sequence Information
- Coding Sequence
- ATGCTGGGCCCCTTTGTCCACGGGTTAGGGAAGAGGAATGCCGACGACAGTGACGAATACGTCCCTGTACCAATGAAGGTGGACCGTCGAGAGGATACCATCGGAGAAGCACCCGTTCACCAAACCAAGCAGCAACGCAGGGCTACGCACCAGGACGCTGAGACCAGGACACACGGTCCAGAACTGCCGCACAGAGAGGTGCCGCAACTGCAGGCGTCTGGGGAACCCCGAGGCAGCATGCTGGCTGTCGCCGGGAACTTCAAGAAACCCTATACagggccCACCAACCTCGATTTGAAATGGAGATTAGTTCGCAAGCGTCACGATCATAGGGACAATGCCGCTATCCTTGTCGAATGCTCAAACGTCACTCCTTTCAAATGGAGGAGCGGATGCTTCATTTGCGCTTTCTGCTCAGTATCCTCAGCAGACTTTGATGACATAAAAGAACATACGGCAACCAAACCGCATAAATCGCATATCTTGACAAATCCTAgtaataaaacgttttttaaaGTTGAAGTTACTGATCTTAAATGCAAGCTCTGTTCCGAAAGTATACCAGACGTCGAAGAATTGTTCGACCACCTAATAGAAAAACATGGTAGGCGATTAACTAAAGAATACGGCATTGGCGTTATACCATATTTACTAACGGGTGCAAAATACAATTGCACAAAATGTAATGAGACTTTTAAAGAATTTACCAGCTTGAATAGACACCTCAACATACATTATCCGAATACTATCTGTCCTATATGTGGAAAACCGTTTGCTGATTCGAATAGAATGAAAGCTCATATGTTAATTCATGAGACTGAGGCGAATGAGCAGTTTAAGTGTACAAAATGTGACGCAATTTTCCCTACGAAAAATGAAAAGAACAAACATGTAGCTAAGCACAATGCTCTCAAACATCGGTGTCCATACTGCAGAGAAGCTTTCAAGAGTTACTCTACAAAATTGATTCACTTAAAAACCTTTCATGCTGATAAGATCCCAGAAAAAAAGTACCCTTGTCACTTATGTTCGGCTGTTTTTGGAAGGTACAATCTTAGAACAAGACACATGGACCGAGCTCATTTATTGAAGGATAAGCCGTTCGCTTGCGAACTCTGTCCTTCCACTTTTGCGGACAAGGCGCAACTACGCCATCATATGGTTAAGCATGGAGGGGAAAGAATATACCAGTGTCAAATATGTAAGAAGGCATATGCTCGAAAGAAAACTTTACGCGAACATATGCGTATTCACGAAAACGATAGAAGATTTGTCTGCTCGTATTGTAGTAAAGCTTTTGTTCAAAAATggccCACCAACCTCGATTTGAAATGGAGATTGATTCGCAAGCGTTACGATCATAGGGACAATGCCGCTATCCTTGTCGAATGCTCAAACGTCACTCCATTTAAATGGAACAGCGGATGCTTTATTTGCGCTTTCTGCCCTTTATCCTCAGCAGACTTTGATGTCATAAAAGAACATACGGCAACCAAACCGCATAAATCGCATATCGTGACAAAtcctagtaataaaatatttcttaaagttGAAGTAACTGATCTTAAATGCAAGCTCTGTTCCGAAAGTATACCAGACGTCGAAGAATTGTTCGACCACCTAATAGAAAAACATGGTAGGCGGTTAACTAAAGAATACGGCATTGGCGTTATACCTTATTTACTAACGGGTGCAAAATACAATTGCACAAAATGTAATGAGAtttttaaagactttaccaaCTTGAATAGGCACGTCAACAAACATTATCCGAATTCTATCTGTCCTATGTGTGGAAAACCGTTCGCTGATTCGAATAGAATGAAAAGTCATATGTTAATTCATGAGACGGAGGCGAACGAGCAGTTTAAGTGTACAAGATGTGACGAAATTTTCCCTACGAGAAATGAAAGGAACAAACACGTTGCTAAGCACAATACTCTCAAACATCGGTGTCCATACTGCAAAGAAGCTTTCAAGAGTTACTCTACAAAATTGATTCACTTAAAAACTTTTCATGCTGATAAGATGCCAGAAAAAAAGTACCCTTGTCACTTATGTTCGGCTGTTTTTGGAATGTACAATCTTAGAACAAGACACATGGACCGAGTTCATTTATTGAAGGATAAGCCGGTCGCTTGCGAACTCTGTCCTTCCACTTTTGAGGACAAGGCGCAACTACGCTATCATATGGTTAAGCATGGAGGGGAAAGAATATACCAGTGTCAAATATGTAAGAAGGCATATGCTCGAAAGAAAACTTTACGCGAACATATGCGCATTCACGAAAACGATAGAAGATTTGTCTGCTCGTATTGTAGTAAAGCTTTTGTACAAAATTGTAGCTTGAAAAGTCACATGAAAACACACCATCGTTCATAA
- Protein Sequence
- MLGPFVHGLGKRNADDSDEYVPVPMKVDRREDTIGEAPVHQTKQQRRATHQDAETRTHGPELPHREVPQLQASGEPRGSMLAVAGNFKKPYTGPTNLDLKWRLVRKRHDHRDNAAILVECSNVTPFKWRSGCFICAFCSVSSADFDDIKEHTATKPHKSHILTNPSNKTFFKVEVTDLKCKLCSESIPDVEELFDHLIEKHGRRLTKEYGIGVIPYLLTGAKYNCTKCNETFKEFTSLNRHLNIHYPNTICPICGKPFADSNRMKAHMLIHETEANEQFKCTKCDAIFPTKNEKNKHVAKHNALKHRCPYCREAFKSYSTKLIHLKTFHADKIPEKKYPCHLCSAVFGRYNLRTRHMDRAHLLKDKPFACELCPSTFADKAQLRHHMVKHGGERIYQCQICKKAYARKKTLREHMRIHENDRRFVCSYCSKAFVQKWPTNLDLKWRLIRKRYDHRDNAAILVECSNVTPFKWNSGCFICAFCPLSSADFDVIKEHTATKPHKSHIVTNPSNKIFLKVEVTDLKCKLCSESIPDVEELFDHLIEKHGRRLTKEYGIGVIPYLLTGAKYNCTKCNEIFKDFTNLNRHVNKHYPNSICPMCGKPFADSNRMKSHMLIHETEANEQFKCTRCDEIFPTRNERNKHVAKHNTLKHRCPYCKEAFKSYSTKLIHLKTFHADKMPEKKYPCHLCSAVFGMYNLRTRHMDRVHLLKDKPVACELCPSTFEDKAQLRYHMVKHGGERIYQCQICKKAYARKKTLREHMRIHENDRRFVCSYCSKAFVQNCSLKSHMKTHHRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -