Basic Information

Gene Symbol
-
Assembly
GCA_958496205.1
Location
OY292406.1:14225488-14237814[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 51 0.0018 0.13 13.4 2.5 1 23 10 33 10 33 0.94
2 51 0.00028 0.021 16.0 3.2 1 23 37 60 37 60 0.91
3 51 0.12 8.5 7.8 4.1 2 23 66 88 65 88 0.93
4 51 0.86 64 5.0 0.1 1 12 95 106 95 108 0.90
5 51 0.043 3.1 9.1 2.0 1 23 142 164 142 164 0.98
6 51 2.5 1.8e+02 3.6 1.0 2 23 235 257 234 257 0.96
7 51 0.017 1.2 10.4 0.5 2 23 263 285 262 285 0.96
8 51 0.0023 0.17 13.1 5.0 1 23 289 312 289 312 0.97
9 51 0.18 13 7.2 5.3 2 23 315 337 314 337 0.95
10 51 0.19 14 7.1 1.6 2 20 343 361 343 363 0.92
11 51 0.0016 0.12 13.6 2.3 1 23 416 439 416 439 0.95
12 51 0.4 30 6.1 0.4 3 23 469 490 468 490 0.96
13 51 0.0021 0.16 13.2 0.4 1 23 511 534 511 534 0.96
14 51 0.05 3.7 8.9 3.8 1 23 539 561 539 562 0.94
15 51 0.95 70 4.9 0.2 1 23 595 618 595 618 0.96
16 51 0.0032 0.24 12.6 4.5 1 23 622 645 622 645 0.97
17 51 0.29 21 6.5 3.1 2 23 652 673 651 673 0.96
18 51 0.043 3.2 9.1 0.7 1 17 679 695 679 696 0.92
19 51 0.2 15 7.0 0.4 1 23 729 751 729 751 0.96
20 51 0.84 62 5.0 0.4 2 20 779 797 778 801 0.77
21 51 0.0069 0.51 11.6 4.1 1 21 848 868 848 869 0.96
22 51 0.00098 0.073 14.3 0.2 1 23 876 899 876 899 0.94
23 51 0.69 51 5.3 0.5 3 23 903 924 903 924 0.96
24 51 0.13 9.6 7.6 1.1 2 21 931 950 930 951 0.92
25 51 0.19 14 7.1 0.9 1 23 1003 1026 1003 1026 0.95
26 51 5.4 4e+02 2.5 0.0 2 23 1054 1076 1053 1076 0.90
27 51 0.0024 0.17 13.1 1.1 2 23 1101 1123 1100 1123 0.93
28 51 0.0015 0.11 13.7 0.4 3 23 1130 1151 1128 1151 0.93
29 51 0.00022 0.016 16.3 3.1 2 23 1156 1177 1155 1178 0.93
30 51 1.6 1.2e+02 4.2 3.8 2 23 1184 1206 1183 1206 0.93
31 51 0.077 5.7 8.3 4.2 2 23 1211 1233 1210 1233 0.97
32 51 0.0039 0.29 12.4 0.8 2 23 1240 1261 1239 1261 0.96
33 51 0.97 72 4.8 0.2 1 23 1313 1336 1313 1336 0.93
34 51 0.078 5.7 8.3 0.0 3 23 1368 1389 1366 1389 0.94
35 51 0.025 1.8 9.9 1.5 2 23 1412 1433 1412 1434 0.95
36 51 0.002 0.15 13.3 1.7 1 23 1439 1462 1439 1462 0.97
37 51 0.91 67 4.9 0.1 1 23 1467 1490 1467 1490 0.90
38 51 0.0044 0.32 12.2 2.7 2 23 1496 1518 1495 1518 0.92
39 51 0.0028 0.21 12.8 0.3 2 23 1526 1548 1525 1548 0.97
40 51 0.43 31 6.0 0.0 2 23 1555 1576 1554 1576 0.95
41 51 3.6e-05 0.0027 18.8 2.5 1 23 1582 1604 1582 1604 0.95
42 51 7e-05 0.0051 17.9 2.3 1 23 1610 1633 1610 1633 0.97
43 51 0.25 18 6.7 0.0 2 22 1766 1786 1765 1788 0.88
44 51 2.8 2.1e+02 3.4 0.5 3 23 1812 1833 1810 1833 0.94
45 51 0.0015 0.11 13.7 1.8 1 23 1838 1861 1838 1861 0.95
46 51 1.1 83 4.7 6.2 1 23 1864 1887 1864 1887 0.96
47 51 0.008 0.59 11.4 0.9 1 23 1894 1917 1894 1917 0.95
48 51 0.00092 0.068 14.4 3.1 2 23 1925 1947 1924 1947 0.96
49 51 0.7 52 5.3 0.6 1 23 1952 1974 1952 1974 0.98
50 51 2.9e-06 0.00021 22.2 0.3 1 23 1980 2002 1980 2002 0.98
51 51 0.0091 0.67 11.2 0.1 2 23 2009 2031 2009 2031 0.93

Sequence Information

Coding Sequence
ATGATCGAAGTGCATGAGAATAAAAAATTTGTATGCTACAAATGTGGGAAAGCATTCAGGTACCAGGCTGGATATTGTCATCACTTAGCTTTGGCTCATGGGCCAGGGTTTCCGTGCAAAGATTGCGGCAAAAAGTGTTCAAGTCAAACTCATTTAAAAGAACACGAGGCCCAGGTGCACGGGAAAAATAAGTTGAAATGCCATGAGTGCGACGCGGAGTTCAAATCGCATTACAAACGCAAAAAGCATTTGGTCTCAGTCCACAATGTTAGCTTGTATTCGTTCCCTTGTACAGAATGTCCGAAAATATTTGTCAATCTTAACATCACAGCAAAGGAGATGAATCGAACTGAACAGAGGCGTTTAAACTTCCGCACCCTTATGAACAATACTTCACTTACCCCCTTCAAATTTCGCGGGAAATATTCGTGCTTTTATTGCGGCACCGATTTACACGATTATCCTAATCTAAAACAACATACAGAAACCCACAAACCTGTCTCCAATAATAACAGAGAATTAGACTTTTTAAAACGTAGCGATCTGGAAATAAAGACTGATATATCAGATGTTAAATGCGATATTTGTTCCGATAACTTTGAAGGTGTCGACGAAATTATCGAGCATTTGATTTTAAGACAcgatttagtttataataaagatGTTTCAATTGGTCTCGTCCCGTATTCGCTTAGAGATATGAAATGTTTGGAGTGCAATGagaataaaactaattttagaAGTTTAGTCATACATATGAATAAGAATCATGCTACCCAGCATCTTACCTGTGAATTCTGTTCACAGAAATATAGCAAAGCTTTGGATTTAGCGTCTCATATCCGAATGTTTCATAAGAAAGAGTATACGTGTAAGGAATGTCACGAAGTATTTACAACATACAATTCGTTTTACAAACATAAGAATAAAGCACATGTATCGACTTGTACAATTTGCTTGAAGTCATTTTCGAACCACCATCTACGTTTGATTCATATGAAACAGAAACACAACACTGATTTAGCTACATGTAGTTTCTGTAACAGACAATTTAGATCTAAAAACTCTTTTCTTCTTCATGTATATAAGTGTGACAAGTTAAAATCGCAAGATCCAAACGAATTGAATATCACAGTCGAAGATACGGAAGACGAGAAACACACGAAATTGAACGAAGCGCGACGTAATATAACTAATATACTAAACATGACATCCGCTATGCCTTTCAAAATCTTCCACAATCGATTCAGATGCTTCTATTGCCCGAAAGAATATATCAATTGCGATGATTTAACACAACACACAAAAGGAGAGCATTCTCAATGTGATATCAACTGCAAATCTATGAGACTCAGAGGCGTATTTGAAGGCGTCGTTGTCAAAATAGATATTGCCGATTTACTTTGCAAGCTATGTTATGAAAAATTTACAGACTTAAACGACATTATCGATCATCTGAAAAATAACCATAAAGCTCTAACAGGAGATTGCAAAGAGTTACTGCAACCATTTAAATTGGCTCATGAAAAGTTTCCTTGTCCATCTTGCGGCGAAGAATTTCGATACTTCAATAAACTGCTTCAGCATATGACAATAAACCATTCCGGCAACAGATTTGTTTGCACTTTTTGTGGTAAATCCTTTAAAGCAGACGCGAATCTCCGCTGTCATATATCGAATCACCACAAGAAGGATACGGTTAAATGCAGCCAATGTCTATTGAGTTTCCATTCTTATAACGCTTTGAAGATACACTGCGGTAAGGCGCATAACGATAAGGTCTTTAATTGTCCGGTATGCGCTGACAAATTTATATCCCAGTACCGGATGAACGTGCATTTGTTGAAGGTACACGATAAAGGTCACAAATGCGTTCACTGTGGAGTATCATTTATTAAATATTCCTTTCTTGATAAGCACATTCGAAGGACACATCTAAATGAGAAAAATATTCAATGTACGCACTGTAACGACAGATTTTTCGATGAGACACGCCTCAAACAACACATGGTTAAACATGTTGGTGAAAGGAATTTTAGCTGTGATCATTGTGGTAGGACTTTTCTGAGAAAACGTAACTTGAGAGATGACGCTTCGGTCCAAAACGCGTCACAGCAACGGCGGAAAAGCCTACAAATTCTCTTCAATAACACAACAATAATACCTTTCAAATGGCGAGCGAAATTTATATGTTTCTACTGTGGAGACGTGTTCAACGAATACTTGCAACTAAAAGAACACACCATATCCCACGGCAATTGTTCCACAACCTGCTATGCtctgaaaaatataaaaggCGCTTACAATGATGTTAAAATTGATATCTCGAACATAACTTGTAAGAAATGTAATAGAGAGTTTAAAAGTTTCGAAGTTATTGTAGACCATCTTATATTTGAGCACCGTTTAAAATACGATAAGTCGGTCGATATGACGTTCCGTTCGTACAGACTTGTTGACAATCGCTGCGTTACTTGCGACTTGCAATTGAACAGTTTTAAAGCTCTCGTACTTCACTGCAATGAGCACCACAGTGAGACATACTATTGCCACTTCTGCGGCaggaaattcttcaagaaatcTTATATAAAAACCCATTTACGAATCTGCCAAAATAGGGACGGGTATACCTGCAAAGTTTGTGGTAAAACGTTTCCCGCCAGTTTGCTGTTGTTGAAACATCGCGTGTCGGGCCATCTGATCGGCTGCCCCATTTGTGGCGAGCATCAGAAAACGTGGAGCGTTCTACATGGGCACATGCAAGCAGCTCACGCCAATGGCGGGTTTAAAGAATGCTATTTCTGCCAGAAGACATTTCACTCCTTAACTGGTCTTAAGATCCATGTCATGAGATGCGACAAGAACATTGAtaagaagagacttgtaaaagAGGAAGTGACTTCTCCGCCTCAGAAACGGAACAAATTATACTTGACAAGCCTGAGACAGAATATTCAGTGCGTCCTGAATATGTCGACGGCAATTCCATTTAAGTTTAAAGCGAGATTCAGCTGTTTTTATTGCTCCAACaattttgtcaactttgaagaTCTAGCACTGCATACAAATTTAACACACACAACTTGCGAGTTGGACATGACTTGCCTTCGAGCTCGGAAAGGCACCCGAACTTCTTGCAGAGTCAATATAGCGTTTCTATCGTGCAAAATCTGCAATGAACCAATGGAAGACTTATCAGAATTCGTCGATCACGCAATTTCCAAACACGACGCCGACTACGACAAATCTATTGACATAAAAGAATGCTTCGAtccatacaaaatcacgaaagaTAACATTTCTTGTCCGCAATGTCCTAAAACCTTCCCATACTTCTGCTCTCTACTGAGACATATAACACTGTCTCATAGTAACTTGTCAGTCATATGCGATTACTGCGGTCGCGGCTTCAAGAATACGCAATTTCTTAGAGTCCATATCACCAATAACCACACAGGCTACTGCGAATGCTCAACCTGTGGCGCAAAGTTTAAAAACAACGACTCGCTTATCCGACATATGGGGAATCATCACAATGTGAAGTATATCAAATGTTCGCACTGTCCTGAGTTGTTCTATTCTCATTATCAGAGGCAAAAGCATTCGATAAAAGTACATAATGATGGAGTTAAGTGCGAGTTCTGTGATCGTCTGTTCACGAAGCATTCCTTTATGAGGAACCACGTTAGGCGAACGCATTTGAAGGAGAAAACCGTACCTTGCACACTTTGCAATATGAAATTCTTTGATAATTTTATGTTAAGAAATCACATGGTGAAACATGATGGTGAAAGGAAGTTCAAATgtCCCAAATTCACAGTGGAGGACCAATTTAAGAAAACGGAAATCGCACGTAAGCTGTTactaaaacgaagaaacatagAGTATATCCTACTGTACAGTAACGTGACACCATtcttatggcacaaacataaatacaaatGCTTTTTCTGCTTAGAAACTATGAAAGATCCTGTTGAATTAAGACAACATACTGCTCTGGCTCATCAACACGCTAATTTGGAGCTTGCCGTTTATGACAagactaaaaaaaacagaaacaaagaTGCAGCCATCAAAATAGACGTAAAAGATATAATTTGTAAACTTTGCGCTCAATCAGTTAGTACGCTTGAAGAGTTAATTCATCATATAATTATAGCTCATGATGCTGAATACGATGTTGGTGTCCCAAATTGTGTTTTACCATTTATCTTAGACAAAGATCAACCGACTTGTCCGATCTGTAATTTAAAGTTTGGTTTTTTCGAGTATTTGTTGCGTCATGCGAATAAGCACCATCTTTCGCATCACTATATATGCGACGTGTGTGGCACTAGTTTCCAGGGAGAAAATCATTTGAAAATGCATTATAGATATTATCATAGAGAAGGGGGATATGTTTGTGAATATTGTGGCATAAATCTAGAGACTCTATCCAAGAAAATTCTTCACGAAAAGAATGTACATTTGGTCAATTTGTGTACTTGTCCGCATTGTCCTGAAACTTTTAAGAGTCCGTATCAAAAGAAGCTGCATTTAGCCAACATACATGGAGTGGAAGAACTTaaaatcaaatgtccttattgCTTCAAGGTGTATCCGCAAGAAAGCATTATGTCTCGTCACATGAGACGAGTACACTTGCGAGAAAAGAACGTGGAATGTGAAGTCTGTGGAGACAAATTCTTCGGTCCATACGACGTGAAACTACACATGGTCAAACATAATGGAGAGAAAAAATTCGTCTGCACCATTTGTGGAAAGAAATTCTCTAAGAAATGCAACCTGAATTCGCATGCTGTTATGCATACTAGGGAGAAAAACTACACTTGCTATGTTTGTGATAGGGCATTTGCACATCAGACAACTCTGAAAATGCATATTAGGAATCGGCACCCGCAATACGAACAAGGTTTTAATATGTTAGCGGAGATCGGCGATAATGAGATGATTCAAATGGAGGTTATCCAGGATGAGTTAGAGAATGCCGAAACTATAATACAAGACGACTTGAATAGCGCTGAAGTTTTAGTCGATCAATACATCCATTACTACCCAGAACGCCTCACCGCTGTCAGAACAAATATATGCACAATCCTTCGCTACGGAAACTTAACGCCCTTTAATTGGAACACGGCCGGATTCAGATGTTTTTACTGCGCCAAATTATTAAAAGACTGTACCGCTGTAAGAAATCATACTGGAAAACACGTTATCCCGGACCTCGATGCTTTTATCAAAAAAACTGTTATCACAAAAGATGTCCCGATCAAGGTGGATGTTACAGAGCTGTCCTGCAAAGTTTGCAATAAGGATTTAGACTCCTTAGATGACTTAATATCTCACGTCGTTGAAGTACATAAGGAGACATACAATGATACAGTCGGAATATGTTTTTTTCCATTCGTATTGGATAAAGTCAAGATGAACTGTAGGCTCTGCAGCGCAAGCTATGACAATTTTTCTTCTATGATCGGCCATATGTATAAACAACATATATATCATTCGTTTATATGCCAATTATGCGGCAATAGTTTCAAAGACCACGTTCGTTTAAAAAGGCACATTAATCTTAGCCATCTTGGACACAGGTGTTCGTTTTGCGGGAAGATTTTTGAAGCTTTCCACAAATTGGACAAACATAAGCAACGATTTCATGGTCAGATCAAGACGATACACGAGTGTAATCTATGTAGTGAGAAATTTGAAAACAATTATTTGGTCAAAGTCCATATGGGAAAGGTTCATAACGTTGAAAAATATCGTCTGAAATGCCAGCATTGTCCGAAAATTTGTACGACGAAGGGAGCATTACGGCTTCATTTACAAAGCTTACACCCGAGCGTGAAATATCAGTGCGACCTTTGCGAGTATACCACTGGAGTCAAATGGCAGATTTCTTTGCATAAGAGAAAACATTTTGGGACGAAGGAGTATGCTTGCTCTATATGTGAGAGGAACTTCGGGCGCGCCAGTAATCTGAGAACACACATGAAAGTGCACACAGGATGTGTTGGCAGAGTTTGCAGAGTATGTAGAAAGGGTTTCACTGATGCGGAGGCTTTGCAGGAGCATGAAAAGGAGACTCATTATTACGATTATAAATAG
Protein Sequence
MIEVHENKKFVCYKCGKAFRYQAGYCHHLALAHGPGFPCKDCGKKCSSQTHLKEHEAQVHGKNKLKCHECDAEFKSHYKRKKHLVSVHNVSLYSFPCTECPKIFVNLNITAKEMNRTEQRRLNFRTLMNNTSLTPFKFRGKYSCFYCGTDLHDYPNLKQHTETHKPVSNNNRELDFLKRSDLEIKTDISDVKCDICSDNFEGVDEIIEHLILRHDLVYNKDVSIGLVPYSLRDMKCLECNENKTNFRSLVIHMNKNHATQHLTCEFCSQKYSKALDLASHIRMFHKKEYTCKECHEVFTTYNSFYKHKNKAHVSTCTICLKSFSNHHLRLIHMKQKHNTDLATCSFCNRQFRSKNSFLLHVYKCDKLKSQDPNELNITVEDTEDEKHTKLNEARRNITNILNMTSAMPFKIFHNRFRCFYCPKEYINCDDLTQHTKGEHSQCDINCKSMRLRGVFEGVVVKIDIADLLCKLCYEKFTDLNDIIDHLKNNHKALTGDCKELLQPFKLAHEKFPCPSCGEEFRYFNKLLQHMTINHSGNRFVCTFCGKSFKADANLRCHISNHHKKDTVKCSQCLLSFHSYNALKIHCGKAHNDKVFNCPVCADKFISQYRMNVHLLKVHDKGHKCVHCGVSFIKYSFLDKHIRRTHLNEKNIQCTHCNDRFFDETRLKQHMVKHVGERNFSCDHCGRTFLRKRNLRDDASVQNASQQRRKSLQILFNNTTIIPFKWRAKFICFYCGDVFNEYLQLKEHTISHGNCSTTCYALKNIKGAYNDVKIDISNITCKKCNREFKSFEVIVDHLIFEHRLKYDKSVDMTFRSYRLVDNRCVTCDLQLNSFKALVLHCNEHHSETYYCHFCGRKFFKKSYIKTHLRICQNRDGYTCKVCGKTFPASLLLLKHRVSGHLIGCPICGEHQKTWSVLHGHMQAAHANGGFKECYFCQKTFHSLTGLKIHVMRCDKNIDKKRLVKEEVTSPPQKRNKLYLTSLRQNIQCVLNMSTAIPFKFKARFSCFYCSNNFVNFEDLALHTNLTHTTCELDMTCLRARKGTRTSCRVNIAFLSCKICNEPMEDLSEFVDHAISKHDADYDKSIDIKECFDPYKITKDNISCPQCPKTFPYFCSLLRHITLSHSNLSVICDYCGRGFKNTQFLRVHITNNHTGYCECSTCGAKFKNNDSLIRHMGNHHNVKYIKCSHCPELFYSHYQRQKHSIKVHNDGVKCEFCDRLFTKHSFMRNHVRRTHLKEKTVPCTLCNMKFFDNFMLRNHMVKHDGERKFKCPKFTVEDQFKKTEIARKLLLKRRNIEYILLYSNVTPFLWHKHKYKCFFCLETMKDPVELRQHTALAHQHANLELAVYDKTKKNRNKDAAIKIDVKDIICKLCAQSVSTLEELIHHIIIAHDAEYDVGVPNCVLPFILDKDQPTCPICNLKFGFFEYLLRHANKHHLSHHYICDVCGTSFQGENHLKMHYRYYHREGGYVCEYCGINLETLSKKILHEKNVHLVNLCTCPHCPETFKSPYQKKLHLANIHGVEELKIKCPYCFKVYPQESIMSRHMRRVHLREKNVECEVCGDKFFGPYDVKLHMVKHNGEKKFVCTICGKKFSKKCNLNSHAVMHTREKNYTCYVCDRAFAHQTTLKMHIRNRHPQYEQGFNMLAEIGDNEMIQMEVIQDELENAETIIQDDLNSAEVLVDQYIHYYPERLTAVRTNICTILRYGNLTPFNWNTAGFRCFYCAKLLKDCTAVRNHTGKHVIPDLDAFIKKTVITKDVPIKVDVTELSCKVCNKDLDSLDDLISHVVEVHKETYNDTVGICFFPFVLDKVKMNCRLCSASYDNFSSMIGHMYKQHIYHSFICQLCGNSFKDHVRLKRHINLSHLGHRCSFCGKIFEAFHKLDKHKQRFHGQIKTIHECNLCSEKFENNYLVKVHMGKVHNVEKYRLKCQHCPKICTTKGALRLHLQSLHPSVKYQCDLCEYTTGVKWQISLHKRKHFGTKEYACSICERNFGRASNLRTHMKVHTGCVGRVCRVCRKGFTDAEALQEHEKETHYYDYK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-