Ibis020273.1
Basic Information
- Insect
- Idaea biselata
- Gene Symbol
- -
- Assembly
- GCA_958496205.1
- Location
- OY292402.1:16295798-16296436[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.9 2.6e+03 -1.0 0.3 35 43 3 11 1 13 0.80 2 2 2.8e-09 1e-06 29.0 0.0 1 40 25 64 25 67 0.96
Sequence Information
- Coding Sequence
- ATGGTGCGGCATTATAAGCGAAAATATAGTAATTTGAGAAATGCCAAACGATTTATGCCGTACACTTCATACACTCCTGAAGACTTAAATAAAGCTTTAACTGATGTTAAATGTAAAAGACTGACTATTAGAGAGGCTGAGAAGGTGTATGGTGTACCAAAAAGTACGATTGGCCGtcatttaaatgaaaaaaacttaATGTACTCAAAGCCTGGACTTCCAACACTATTTTCGGAGGCAGAAGAAAAAACATTTGTTAATTACATTAAACATATGGGAGAATGGGGATTTCCTTTAGATTTAATGGATCTGAGAGTCTTtgctcaaaaatatttaaacaaaataggaAGGACGGTCTATACCTTAAAGGAAAATCTACCAGGACGGGATTGGGCAGCGTGTTTCATGCAAAGGCATAAAGAGCAAATTTCTTATAGATGTGCAGCAAATATATCCTCAGACAGAGCAACCTTAAACTCAAAAGTAATAGACGACTTTTTTGAcaactttgaaaaaaatatggaaGACGTAACACCGGATTGTGTAATAAATTATGACGAAACGAACCTGACTGACGATCCTGGATccaagaaatatatttttaagagaGGATTGTTAATAATTCAAAATCATCTATAA
- Protein Sequence
- MVRHYKRKYSNLRNAKRFMPYTSYTPEDLNKALTDVKCKRLTIREAEKVYGVPKSTIGRHLNEKNLMYSKPGLPTLFSEAEEKTFVNYIKHMGEWGFPLDLMDLRVFAQKYLNKIGRTVYTLKENLPGRDWAACFMQRHKEQISYRCAANISSDRATLNSKVIDDFFDNFEKNMEDVTPDCVINYDETNLTDDPGSKKYIFKRGLLIIQNHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -