Basic Information

Gene Symbol
stc
Assembly
GCA_907269075.1
Location
OU026093.1:2562266-2575196[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 2 2.8e+04 -4.3 1.6 15 19 487 491 486 491 0.81
2 13 0.052 7.3e+02 0.9 1.5 2 10 519 527 519 527 0.92
3 13 3.7e-05 0.51 11.0 18.1 4 19 535 550 533 550 0.93
4 13 0.00024 3.4 8.4 15.6 1 18 586 603 586 604 0.97
5 13 0.00056 7.7 7.3 11.1 1 19 642 660 642 660 0.97
6 13 1.7e-05 0.24 12.1 12.0 1 19 701 723 701 723 0.87
7 13 2 2.8e+04 -5.3 2.2 6 10 753 757 753 757 0.94
8 13 0.013 1.8e+02 2.9 8.9 1 12 763 774 763 774 0.94
9 13 0.047 6.5e+02 1.1 0.8 4 10 778 784 777 784 0.93
10 13 1.8e-08 0.00025 21.6 13.9 1 19 790 808 790 808 0.99
11 13 0.0015 21 5.9 13.2 9 18 854 863 848 864 0.91
12 13 1.5e-08 0.00021 21.8 12.5 1 17 900 918 900 924 0.83
13 13 0.00023 3.2 8.5 8.0 1 14 930 942 930 957 0.93

Sequence Information

Coding Sequence
ATGTCGCAGTGGAATAACTCTTACCCTTACAACAACCAGTATCAAGGTCAGAGCTCGTGGAACGGGGATCCGAACGGACAATACGCGAACCAAGCTCAAGCTTACTACAGACCGGAAAATAATGCTCAATACGTTAGTTTTAACGAGTTTCTGAATCAAATGCAGAACGGTGCTGGTGGGGCGAACGCTCCTAACTACAACAACATGCAATATACTAATGTTCCTGGTAACAATCAGTACTACCAACAATTGCCGCCGAACTCACAACCCAATGATTACAGTTACCCTGGCCCTTCTAACGCATCCGGTGATGTAAACCCCCACCCAGCGGGTGCGCCTGCACAAAGCCAGTACAATACAGAGCAGAATACATACACAAACGAAGTCATACTGAAGTCGAACCTGACAGCTACAGCTACAGAGTTTGTGCCAAAAAGTTCTATTGCCAAACCTTCCACTAGCAATCAGAACATTCCAGAGACTTCTAGTAATAAAAATTCTTATGAGAACAGGACTGATAGAACTGAACCGAGCTCCAGTAGCTCTTCAGATAAAAACTGGAGGGAAAGGCCACAGAGCTCAAACAAAAATAATTTAAAAGAAAAATCAATCACCAATGGTTATTCCGATGACCACAGTAGCTACGGTAACCCTCATAATCGTGATACATATCGTAACAATGATAACCGCAATGAATCTTCTAATCGGCAAGAGAGAGAAAGCCAGAGTTACGAAGAAAACGCAGAAGAAACTCATCGCAGCCAAGAATCTAGTTCAAATAGCCGCAATTACGATACTGATCGGAATTATGACAACAGCCGTAGCTCTGACAATGGCCGTAACTATGACAATGGCCGTAAATATGACAACAGCCGAAGTTATGACAATGCCCGTAGTTATGACAACGGCCGAAGTTATGACAACAGCCGAAGTTATGACAATGGGCGAAATTATGACAACAGTCGTAATGATAGGAAGAATCAGAAAGGAAAGTCCAAAGCTAAAGACGATAATAGGACATTTTACAATAGCACAATTAGTAAGGACAGTCAGGATGTCAGGACAAGGGAGTCTTCAGGGCGGAGGAACTATACCGGCTCTCAAAGGTTGCGTGGGAATGATAGGTACAACCAGGATGATGAACAGTTTGCTAACAACTACTTGCAGAGAGATGATAAGGTTGATAAAGAAAAGGCTGTGAAGTCACAAGTTGCTAGCCCAAATAGATTTAATAATAAGAACAGGGATCAAGGGAGAGAGAGAGAGGCTAACAAAGAGATGACGCAACGTGAGCGCCTAACTGAGCAGCTTGATAGAGGCACGCTGGAGTGCCTCGTCTGCTGCGATCGGGTGAAGCAGATAGACCCGGTCTGGTCCTGCAGTAACTGCTACCATGTGCTGCATCTACGGTGCATTAGGAAGTGGGCTGTTAGCAGTACTGTTGAAGGCAAATGGCGGTGCCCGGCGTGCCAGAACACTAACGACAGTATACCGGGCGATTACCGATGCATGTGTGGCGCGGTACGATCGCCGGAGTACCAACGCGGCTCGACCGGGGCGCATACTTGCGGGAGATCCTGTCGACGGCCGAGATCGTGTCCGCATCCTTGCACGTTGCTCTGTCACCCTGGACCGTGTCCGCCTTGTCAGGCTACAATCACCAAACAATGCGGCTGTGGTGCTGAGACTCGTTCAGTGCTCTGCAGTAGCAAGTTGCCGCAAGAGTGCGGCCGTAGTTGCGGGAAGATGCTAGAGTGTGGAGAACACAGCTGCTGCAAGGACTGCCACGAGGGATCTTGCGATCTTTGCGATAAGACTATTACACAAGTATGCTTCTGTCCTGCTCAAACAACCCGTGTCGTGCCTTGCAGGGGCGTTGGCACCGCGTGGTCGTGCGGCGCAACGTGCGGCCGCGTGCTGGCGTGCGGCGCGCACGTGTGTCGTGCTTCCTGCCACGTGCCTCCGTGCGGGGCTTGCTCCTTGTTGCCCGATAGAGTGCTCACTTGCCCTTGCGGAAAGAAGAGACTAGACAAAGAGCAACGCAAATTGTGTACGGATCCGATACCATTATGCGGAAATATTTGCGCTAAGCCTCTGTTGTGTGGGCCTGATGGGGACAAACATTTCTGCAAGCTTGATTGTCATGAAGGCCCGTGCCCAGTTTGCCCTGATAAATCTTTAGCCCAATGCCGTTGTGGTCACTCTAGCCGTGAAGTGCCTTGCGCTGATCTGCCTGAGTTAGCAGGCAATGTGCTCTGCCAGAAGAAGTGTAATAAGAAGTTATCGTGCGGCCGTCACCGCTGCCGCACTACATGTTGCTCGTCCACGTCGCACCGTTGCAGCGTCGTCTGCGGCCGCTCGCTCACCTGCGGCCTGCATCGCTGCGAGGAGTTCTGTCACACGGGACACTGCGCGCCATGCCCTAGACTCAGTTTCGACGAGTTACGTTGCGCTTGTGGCGCGACGACCCTCCTGCCGCCGGTAGCATGCGGCGCGCGCGCTCCGCCGTGCACGGCGCCGTGCCGCGCCCCCCGCGCCTGCAACCACCCCCCGCATCATGCCTGCCATCCCGGGCCCTGTCCGCCCTGTGTCGTGCTCACCGCCAGGCGATGCCATGGACTACACGAGGAAAGGAAAACAATACCGTGTTCACAAGAGGACTTCTCGTGTGGTCTACCATGCGGAAAACCGCTGCCTTGTGGGAAGCATACCTGCATCAAGATATGCCACAAGGGACCGTGTGATACAAGCAAATGTACACAGCCGTGCACAGCTCCTCGTGCGTCGTGCGGACACGAGTGCGCAGCTCCGTGCCACGCGGGCGCGACGCCGGGCACACCGGCTGCATCGTGCCCGAGCACGACACCGTGCCGCCGCGTCGTGCGCGCCACGTGCCCCTGCGGACGGCGACACGCTGAACGTACCTGCGCTGATAACTCCAGGGATTTGGCCAGAATAATGAGTGCCTTAGCGGCTACGAAGATGCAGGAAGGTGGCTCCGTCGACTTATCCGACGTGCAACGACCTGTTAATATGTTGAAAACACTGGAATGCGACGACACATGCCGTCAAGAGGCTCGGTCCCGTCAACTGGCGCTGGCTCTACAGATCCGCAACCCCGACGTGAGCGCTAAGCTGGCGCCGCGCTACAGCGAGGTGGTACGTGCGCAGGCAGCACGAGACCCCACCTTCGCTACACACGTGCACGATAAGCTGACCGAGCTTGTGCAGAGGGCTAAAAACTCGAAACAGAAGACCCGTTCGCACTCGTTCCCGTCAATGAACCGACAGAAGCGTCAGTTTATCCACGAGTTGTGTGAACACTTCGGCTGCCAGAGCGTCGCTTACGATGCCGAACCTAACAGGAATGTCGTCGCTACCGCTGATAGGGAAAAGTCTTGGCTACCAGCAATGAGCGTGCTCGAGGTGCTAGCGCGCGAGGCGGGCAAGCGCCGCGTGCCCGGCCCAGTGCTGCGCGCGCCGCCCTCCGCAGCTCAGTCGTCCTCCGCAAATACACCCGCTAATACTAACACTTCGACCAATAACAGGTCCGGCGGCTGGGCAACCCTAACAGCGTCCAGTACATGGGCAGCTCGCAGCCAACCTAAACCACCTCCCAAGATAGACTACTTCGACAACCCGCCAGACAATTAA
Protein Sequence
MSQWNNSYPYNNQYQGQSSWNGDPNGQYANQAQAYYRPENNAQYVSFNEFLNQMQNGAGGANAPNYNNMQYTNVPGNNQYYQQLPPNSQPNDYSYPGPSNASGDVNPHPAGAPAQSQYNTEQNTYTNEVILKSNLTATATEFVPKSSIAKPSTSNQNIPETSSNKNSYENRTDRTEPSSSSSSDKNWRERPQSSNKNNLKEKSITNGYSDDHSSYGNPHNRDTYRNNDNRNESSNRQERESQSYEENAEETHRSQESSSNSRNYDTDRNYDNSRSSDNGRNYDNGRKYDNSRSYDNARSYDNGRSYDNSRSYDNGRNYDNSRNDRKNQKGKSKAKDDNRTFYNSTISKDSQDVRTRESSGRRNYTGSQRLRGNDRYNQDDEQFANNYLQRDDKVDKEKAVKSQVASPNRFNNKNRDQGREREANKEMTQRERLTEQLDRGTLECLVCCDRVKQIDPVWSCSNCYHVLHLRCIRKWAVSSTVEGKWRCPACQNTNDSIPGDYRCMCGAVRSPEYQRGSTGAHTCGRSCRRPRSCPHPCTLLCHPGPCPPCQATITKQCGCGAETRSVLCSSKLPQECGRSCGKMLECGEHSCCKDCHEGSCDLCDKTITQVCFCPAQTTRVVPCRGVGTAWSCGATCGRVLACGAHVCRASCHVPPCGACSLLPDRVLTCPCGKKRLDKEQRKLCTDPIPLCGNICAKPLLCGPDGDKHFCKLDCHEGPCPVCPDKSLAQCRCGHSSREVPCADLPELAGNVLCQKKCNKKLSCGRHRCRTTCCSSTSHRCSVVCGRSLTCGLHRCEEFCHTGHCAPCPRLSFDELRCACGATTLLPPVACGARAPPCTAPCRAPRACNHPPHHACHPGPCPPCVVLTARRCHGLHEERKTIPCSQEDFSCGLPCGKPLPCGKHTCIKICHKGPCDTSKCTQPCTAPRASCGHECAAPCHAGATPGTPAASCPSTTPCRRVVRATCPCGRRHAERTCADNSRDLARIMSALAATKMQEGGSVDLSDVQRPVNMLKTLECDDTCRQEARSRQLALALQIRNPDVSAKLAPRYSEVVRAQAARDPTFATHVHDKLTELVQRAKNSKQKTRSHSFPSMNRQKRQFIHELCEHFGCQSVAYDAEPNRNVVATADREKSWLPAMSVLEVLAREAGKRRVPGPVLRAPPSAAQSSSANTPANTNTSTNNRSGGWATLTASSTWAARSQPKPPPKIDYFDNPPDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00838108;
90% Identity
iTF_00838108;
80% Identity
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