Iave014506.1
Basic Information
- Insect
- Idaea aversata
- Gene Symbol
- -
- Assembly
- GCA_907269075.1
- Location
- OU026083.1:4244863-4262460[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0042 0.33 12.1 1.5 1 23 312 335 312 335 0.98 2 11 0.07 5.5 8.3 0.9 2 23 342 363 341 363 0.96 3 11 8.2 6.5e+02 1.7 1.0 1 21 367 387 367 390 0.80 4 11 0.00048 0.037 15.1 4.0 2 23 439 461 438 461 0.96 5 11 3.3e-06 0.00026 21.9 1.0 2 23 464 486 463 486 0.96 6 11 8.9e-05 0.007 17.4 1.6 1 23 492 514 492 514 0.97 7 11 4.5 3.5e+02 2.6 0.5 2 21 524 543 524 548 0.89 8 11 1.2e-05 0.00097 20.1 1.2 1 23 553 576 553 576 0.94 9 11 0.0007 0.055 14.6 2.8 1 23 582 605 582 605 0.97 10 11 6.1e-06 0.00048 21.0 1.7 3 23 615 635 613 635 0.96 11 11 0.00064 0.05 14.7 0.4 1 23 641 664 641 664 0.97
Sequence Information
- Coding Sequence
- ATGCTGGAAGATCCCAATATATGTGAGGCTTGTCTCAGTAAAGACCGTCAACTAGTTATCATTAACAGAATTCGTCCATTGATCGTGTATTTGGACATAAAAGAGCTGGCAAAGTCACAAGGATGTATTTGCTGGGAGTGTTATACTACCATTATAAGGTTCAACAAATTCCGATGCATTGCCAGAGATGTCCAGGAGATACTGGCTAAGGGATCTACGCATAAAAAATCATTTAGTCATTTAGGTATAAATATAATTAAGTATTACGACTACAATTTTGAATATATAGAACCTATTATACAAGAAAATGATAATACTGAGCCAATTTTAGTAAAACAAGAACTAGAGAATGATTGCGATAATGATGAAACAGTATTTGTCGATGTTATTGAATGTAAACAAGAAAAAATGTTGCCAAACAAAAGATTGTCTTCGAAAAGATTGGCTACGAAAAGATCATTAAAAGAAAAATCGAAAGATACCAAGAATGATTTAGCAGAAAAGTTTATGTTAACTAAAGATAGATTGACATCAAAAAGATTGTCAAAAGATAGATCTAAAGATATGAAAAATGATTTGATAGAAGAGTTTCAGACAGTTATGGTAACTGACGGAATATTGCCAGCAAAAAGATTGTCAAAAGATATATCAGATGGGTCAGAGGAGTTGGTAACAAAAAGACTGCCATCAAAAAGACTATCAAAGCCAAAATCAAAAGATACACCAGAAGATACGTTTGAAAACGTGTTAACTGAAAAATCGGAAACAAAAAGTTTACCACCAAAAAGATTGACAAGAAAAAGATTGTCAGCAAAAAGATCAGAAGATCCACCAGAATTGTCAGAGAAGTTCGAAATGGTGACATTGACTGATGAAGAAGTTACAAAAATCAGAGAAGAGAAGAGAAACCATCACAATTATAAGAAATTACCGTTTAAGTGTGATTTTTGTGTGCTTGGGTTTACGAAGAAGGATAATTATGATTATCATATGGCCACAAAACATGATGAGAGTAAAGGTTCACCGTGTGACGTTTGCTCGGTACGATTCACAAACTTGATGGTTCTACACAACCATAGAAACTTACACTATCAGCACTTCAGATGTAAACTATGTGAATACAAAGGCAACACGCACATGGCGATCGTGAACCACGTCACTGAGAAACACAAGGACGACACCGCTCACAGAATACATTGCAAATTGTGTACACAGTGCTTTAGATGTAAACTATGTGAATACAAAGGCAACACGCACATGGCGATCGTGAACCACGTCACTGAGAAACACAAGGACGACACCGCTCACAGAATACATTGCAAATTGTGTACACAGTGCTTTAGAAATCGTGATGAAATATCTGCCCATATGAGAACAGAGCATACGTTGTATTGCAACGAATGCGGTGAGAAATTCAAGACGAAAGGCAGTCTAAGATTACATTTAAAACGTCTCCACACAATAAAAAGGGAGTTCATCTGCCCTGACTGCAAAAAGACATTCCTCACAAGATCCCGGTTAGAAACCCACATGACACGTCACAGCACTACGTTAGCCAAACGGCTGGCTTACTGCACCGTATGCCATGTCCAGTACAAAGACTTGGCCATTTACAGGAGCCATTTGAGGAATAGTGCCAACCATGTGGAGGAAAAGTTTCCATGTCCAGATTGTGATAAGAAGTTCGCATCAAAGGCGTATTGGAAAAAACATTATAATTTCTATCATTTAAAGAAATCTCAACACAAATGCGATGAATGTGATAAGATATTTATCTCGTATTTCCTTCTAAAAGGCCACAGACAGAAATACCACGGTCTAACACGACCAAGGAACCATTTGTGTAATATTTGCCAGAAAAGCTTTTATAATATAACAAATCTCCGAGCTCACATGCAGATACACTCGTCCCATAGAGCGTACATGTGTGCAAAATGTGGTGATACATTCAAACAGAGGCCGGCTCTGTATACGCATCAGAGGCTGGTACATAGCGAAAATAAGTAA
- Protein Sequence
- MLEDPNICEACLSKDRQLVIINRIRPLIVYLDIKELAKSQGCICWECYTTIIRFNKFRCIARDVQEILAKGSTHKKSFSHLGINIIKYYDYNFEYIEPIIQENDNTEPILVKQELENDCDNDETVFVDVIECKQEKMLPNKRLSSKRLATKRSLKEKSKDTKNDLAEKFMLTKDRLTSKRLSKDRSKDMKNDLIEEFQTVMVTDGILPAKRLSKDISDGSEELVTKRLPSKRLSKPKSKDTPEDTFENVLTEKSETKSLPPKRLTRKRLSAKRSEDPPELSEKFEMVTLTDEEVTKIREEKRNHHNYKKLPFKCDFCVLGFTKKDNYDYHMATKHDESKGSPCDVCSVRFTNLMVLHNHRNLHYQHFRCKLCEYKGNTHMAIVNHVTEKHKDDTAHRIHCKLCTQCFRCKLCEYKGNTHMAIVNHVTEKHKDDTAHRIHCKLCTQCFRNRDEISAHMRTEHTLYCNECGEKFKTKGSLRLHLKRLHTIKREFICPDCKKTFLTRSRLETHMTRHSTTLAKRLAYCTVCHVQYKDLAIYRSHLRNSANHVEEKFPCPDCDKKFASKAYWKKHYNFYHLKKSQHKCDECDKIFISYFLLKGHRQKYHGLTRPRNHLCNICQKSFYNITNLRAHMQIHSSHRAYMCAKCGDTFKQRPALYTHQRLVHSENK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -