Iave014842.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Idaea aversata
Gene Symbol
-
Assembly
GCA_907269075.1
Location
OU026083.1:7734264-7738378[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.022 1.7 9.9 2.8 1 23 288 310 288 310 0.98
2 16 0.08 6.3 8.1 4.8 1 23 316 338 316 338 0.97
3 16 0.00021 0.016 16.2 4.1 1 23 344 366 344 366 0.97
4 16 0.045 3.5 8.9 7.9 1 23 372 394 372 394 0.96
5 16 7.6e-05 0.006 17.6 2.0 1 23 400 422 400 422 0.96
6 16 0.0044 0.34 12.0 2.3 1 23 430 452 430 452 0.97
7 16 0.0087 0.68 11.1 1.3 1 23 458 480 458 480 0.97
8 16 0.00083 0.065 14.3 2.0 1 23 486 508 486 508 0.98
9 16 0.00012 0.0094 17.0 4.0 1 23 514 536 514 536 0.97
10 16 0.0028 0.22 12.7 2.9 1 23 542 564 542 564 0.97
11 16 0.00075 0.059 14.4 4.7 1 23 570 592 570 592 0.98
12 16 0.014 1.1 10.5 2.0 1 23 598 620 598 620 0.96
13 16 0.00073 0.057 14.5 5.6 1 23 626 648 626 648 0.98
14 16 0.0022 0.17 13.0 2.4 1 23 654 676 654 676 0.97
15 16 0.0031 0.24 12.5 2.9 1 23 682 704 682 704 0.97
16 16 0.0039 0.3 12.2 3.3 1 23 710 733 710 733 0.95

Sequence Information

Coding Sequence
ATGTCGGCGTGTAGGGTGTGCCTAGCAAGCGACTGCGAGATGTACCGTCTCGCGAACACGCCGCTCGAGGAGACGTACGAACGTGTAACCAGCGGGACGCTGGTCGTGGAGGGGCGGCCGTGCTGCGTGTGCGGCGTGTGCCTGTCCGCGCTGCGCCGGTGTCGCCGGTTCATTGACACTGCGCGGGAAGCCAACGACGCGCTCGACACCTGGATCCGGAACCATCGCAATACAGACACGTTGAAGCTTACTGAGCGACCGTTGTTCACCTTCACTCGAACCCCCACTGAGGTCTTCGAGGCCACATGTCTGGAGGGCATCTATGAGTCAGGAGTCAAAGAAGAGAGTGACACGGCAGAAAATAAATGTAATAAAATGCTTAATTTTAAAAACGAGGGTACTTCTGATGAAGTTAATATCCTGACGGAGGAAATCAAGTATGAAGTCACAAGTGATGGTGGCAATGACAACACACATGTATCTGATGATGAAAGTGATGAGACACAGATGTCAGACAACATTGGAAGCCACTTTACAGTCAATTTTGAATGTGTCAACATACAGGAGGATATGATAGATGATCAAATGGACACTAAAACATTAGCTGATGTTAAAATTAACATAAACGAGATGGACAATGTTAGAGGTGAAACCACTCCTGGTACATCCAATGTTGGAAGGAATCGTCCAACTTCAATGCAGGACGAGGTTCCGTTGCAAAGATACAGAAAGAGGGTGAAGCCAAATGATAATACCAAAAGTGGTCCCGCACTCAAGAAACGTAGACCGATGACATCAGAACATCAACCCGGGAACACCGACCCAGTAGCTACAGCTGCACCACACGATGAGGGTGACACCTTCTCTTGTAATCAATGCAATTATAAAACTCCAAAACAGCAGCTATTAAAGGAACATTCCAAAAAACACACTGTAGAAAAACAATATTTTTGCGATAAGTGTGATTATAAATGTCTCAAAAACGGTGACTTCAAGCGGCATTTAATGACTCATACTGGTGAAAAGCCGTTTGCATGCGATAAGTGTGATTATAAATGTAGTCGAAAAGGCCAATTAAAGCAGCATTTAACGCGTCATTCTACAGAGAAACCGTTTGCGTGTGATAAGTGTCATTATAAAACAAAACACAAGACCCATTTAAAAGTCCATTCCATGATCCATTCTGGGCAAAAACCGTATTTATGCGATATGTGTGATTATAAATGTATTCAAAAGGGTAATTTAGTAAAGCATCTACGATCTCATACTGGTGAAAATGAAAAGCTGTTTGCGTGCGATTTGTGTGACTACAAAGGTAAATATAGTTGCAATTTAAAATTGCATTTAATGACACATACTGGTGAAAAACCGTTTGCGTGCGATATGTGTGATTATAAAAGTTGGCATAGTGGCAATTTAAAACGGCATCTTTTAAGCCATACTGGTGATAAGCCGTTTGAATGCAAAAAGTGTGATTATAAAAGTACTCAAAAGGTGAGTTTAGAACAGCATTCATCGACTCACACTGGTGATAAGCGGTTTGCTTGCAAAAAATGTGATTATAAATGTAATCAAAAAGTGAGTTTGCAAAGGCATTTACTGACGCATACTGGTGAAAAACCGTTTGCATGCGATAAGTGTGATTATAAATGTAATCAAAAGGTAAGTTTAAAAGAGCATTCGTTGACTCATACTGGTGAAAAACCGTTTGTTTGTGATAAGTGTGATTACAGATGTAGTCTTAAGAGGTATTTAAAAAAGCATTTATTGACTCATAGTGGTGAAAAGCCGTTTGCTTGCGATAAATGTAATTATAAATCTTATCAGAAGATAAGTTTAAAACAGCATTCATTGACTCATACTGGTGAAAAGCCGTTTGTTTGTGATAAGTGTGATTATAAATGTAATCAAAAAACCAGTTTGAAACATCATATAGGAACTCATACTGGTGAAAAACAGTTTGCTTGCTATATGTGTAACTATAAAACTATGCAGAATTTTAATTTAAAACGGCATTTAATGAGCCATACTGGTGAAAAGCCGTTTGCATGCGATAGGTGTGATTATAAATGTATTGCAAAATCCAGTTTAAAAAAGCATACATTGACACATACTGGTGAAAAGCCGTATTTGTGCGATAAGTGTGATTATAAATGTACTGAAAAACGCGCGCTGTATAAACATATTAAGAAGGTTCATGCTGGTGGTGCGTAG
Protein Sequence
MSACRVCLASDCEMYRLANTPLEETYERVTSGTLVVEGRPCCVCGVCLSALRRCRRFIDTAREANDALDTWIRNHRNTDTLKLTERPLFTFTRTPTEVFEATCLEGIYESGVKEESDTAENKCNKMLNFKNEGTSDEVNILTEEIKYEVTSDGGNDNTHVSDDESDETQMSDNIGSHFTVNFECVNIQEDMIDDQMDTKTLADVKININEMDNVRGETTPGTSNVGRNRPTSMQDEVPLQRYRKRVKPNDNTKSGPALKKRRPMTSEHQPGNTDPVATAAPHDEGDTFSCNQCNYKTPKQQLLKEHSKKHTVEKQYFCDKCDYKCLKNGDFKRHLMTHTGEKPFACDKCDYKCSRKGQLKQHLTRHSTEKPFACDKCHYKTKHKTHLKVHSMIHSGQKPYLCDMCDYKCIQKGNLVKHLRSHTGENEKLFACDLCDYKGKYSCNLKLHLMTHTGEKPFACDMCDYKSWHSGNLKRHLLSHTGDKPFECKKCDYKSTQKVSLEQHSSTHTGDKRFACKKCDYKCNQKVSLQRHLLTHTGEKPFACDKCDYKCNQKVSLKEHSLTHTGEKPFVCDKCDYRCSLKRYLKKHLLTHSGEKPFACDKCNYKSYQKISLKQHSLTHTGEKPFVCDKCDYKCNQKTSLKHHIGTHTGEKQFACYMCNYKTMQNFNLKRHLMSHTGEKPFACDRCDYKCIAKSSLKKHTLTHTGEKPYLCDKCDYKCTEKRALYKHIKKVHAGGA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-