Iave014606.1
Basic Information
- Insect
- Idaea aversata
- Gene Symbol
- -
- Assembly
- GCA_907269075.1
- Location
- OU026083.1:5698912-5710143[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.01 0.82 10.8 1.7 1 23 65 87 65 87 0.98 2 27 0.0016 0.13 13.4 0.8 1 23 93 115 93 115 0.95 3 27 9.7e-05 0.0076 17.2 0.4 3 23 123 143 121 143 0.97 4 27 9.1e-05 0.0071 17.3 1.2 1 23 217 239 217 239 0.98 5 27 2.2e-05 0.0018 19.3 1.2 1 23 245 267 245 267 0.99 6 27 0.022 1.7 9.9 1.0 1 23 273 295 273 295 0.98 7 27 7.8e-05 0.0061 17.6 1.6 1 23 301 323 301 323 0.98 8 27 0.0018 0.14 13.2 0.8 1 23 329 351 329 351 0.95 9 27 0.00087 0.069 14.2 0.3 3 23 359 379 357 379 0.97 10 27 0.0069 0.55 11.4 7.6 1 23 385 407 385 407 0.97 11 27 8.4e-05 0.0066 17.5 0.6 1 23 413 435 413 435 0.97 12 27 0.0005 0.039 15.0 0.8 1 23 441 463 441 463 0.95 13 27 0.086 6.7 8.0 0.9 1 23 509 533 509 533 0.89 14 27 1.9 1.5e+02 3.7 0.7 3 23 541 562 539 562 0.92 15 27 0.0038 0.3 12.2 0.3 1 23 568 590 568 590 0.98 16 27 5.3e-05 0.0042 18.1 1.4 1 23 596 619 596 619 0.97 17 27 1.2 91 4.4 3.7 1 23 654 676 654 676 0.80 18 27 0.041 3.2 9.0 0.5 1 23 682 704 682 704 0.97 19 27 0.72 56 5.1 4.2 1 23 710 733 710 733 0.94 20 27 2 1.6e+02 3.6 3.2 1 23 739 762 739 762 0.93 21 27 7.6e-05 0.006 17.6 2.4 1 23 769 791 769 791 0.95 22 27 0.0044 0.34 12.0 0.3 1 23 799 821 799 821 0.98 23 27 8.6e-06 0.00067 20.6 0.6 1 23 827 849 827 849 0.97 24 27 0.00022 0.018 16.1 2.1 2 23 869 891 868 891 0.96 25 27 0.063 5 8.4 3.5 3 23 899 919 897 919 0.97 26 27 0.012 0.95 10.7 2.4 1 23 929 951 929 951 0.98 27 27 0.00019 0.015 16.3 1.4 1 23 957 980 957 980 0.97
Sequence Information
- Coding Sequence
- ATGCTCCTCACAGGTGCTCCTACAATCAAGAAAGAGAGACCAACAACATCGAAACACCGACCCGTGAAGGCTGATGGAGCGGCTGAAACCAAAATGAGAAGAAAAAGATTTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATACGAAGCCATACTGGCTACAAACCGTTTAAGTGCGATAAGTGTGATTTTAAAACTGCTGCACCGTGTGCGTTAAAGCGTCATGAAATGACACATACTGGTGAAAAACCGTTTTTGTGCGATAGGTGTGATTTTCGAAGTGCTACAAAAGGTGGTTTGAAACGACATTTAATGACACACACTGGTGAAAAACCGATTGCGTGCAACCAATGCGATTTTAAAACCGCTACAAGGTCCGATTTGAAAAGGCACATAATGATACATACTGGCGAGAAGCCGTTCTCATGCGATAGATGTGATTATAAATGTGCTGAAAAGGGTGCTCCTACGACCAAGAAACACAGACCATCAACATCGACGACTGATGGAGTTGCAGCAGCTCCAGTGAAAAGAAATAAGTTTGCATGCGTTGATAGTAATTATAAAAGTTCTTGGAAATATAATTTTAAACTGCATTTACGAAGCAATACTGGTAAAAAACCGTTTAAGTGCGGTAAGTGTGATTATAAAGCTGCTCAAAAAAGTCAACTGAAACAGCATTTAATGTCCCATACTGGCGAAAAACCATTTCAATGCGATAAGTGTGATTATAAAGCTGCTCAAAAAAGTCAGTTGAAACAGCATTTAATGACACATACGGGCGAAAAACCGTTTCAGTGCGATAAGTGTGATTATAAAACTATCGCTGTAAGTTTTTTGAAACAACATTTATTGAGACACACTGATGAAAAACCGTTTATGTGCGATAAGTGTGATTTTAAGAGTTCTAGAAAGGGTGGTCTGAAGCGGCATTTGATGACTCACACCGGTGAAAAACCATTTCTGTGTGAAAGATGCGATTTTAAGAGTGCCACAAAAGGTGGATTGAAGCGGCATTTGATGACACACACTGGTGAAAAACCGATTGCATGCGACCAATGCGATTATAAAGCTACTCAAACTATTGATTTAAAAAGACATTTAAGAACACATACTGGCGAAAAACCGTTTAAGTGTACTAAGTGTAAATATAAGTGTACTAGAAAAGAAAGTTTGAAACAGCATTTCATGTTACATACTGGTGAAAAACCGTTCGCTTGCGATAAATGTGATTATAAAAGTACAAATAAGGGCAACTTAAATCTGCATTTAATAACGCATATTGGTACGAAACCATTCTTGTGCGACAAATGTGATTATGAATGTATATCAAATGGAGCCTTAAAACGGCATTTAATGATACATACTGGTGAAAAGCCGTTTTCATGCGATAAGTGTGATTATAAAAGTTGTGATAAGGGTACTCCAGACATCAAGAAACCTAACACACTTGAAGTCATAACTCGTCAGAAAAAAGGAGGATTTTCTGAAAAAACGAAGTTTGCCTGCGATTACTGCGACAAAAACGATTACTCTTATGCCGATTCTTTAAAGCAACATCTGCAGAAATTTCACAGTGACAAGAAACCGATCATATGCGATTTCTGTGACCATGAGACTTTGAATAAAAGCTTGCTCGAATCCCACGTGACTAGATTACATAAAGAGGGAAAGGAATTCGTGTGTTACATCTGTGAATATGCAAGCTCTTCTAAAACTGAGTTTATAGAGCACCTAAAGATCCATACTGGCACGAAAGCGTTTACGTGCTCTCTTTGCGAGACAAAATTCACAAGGAAAAATGCTTTGAAAACTCATCTCGATACTGTTCATAAAGAAGAACTGTCTAAAAGTGACGGTACAAATATTACTGCAGCAGTTGTGGATAAAGATGTTGACGACCTTATCGAGAGGATATATCCTGATAAACTTTCGTTTTCTTGTGACCGTTGTGATTTCAAATGCGGTTTTAAATTCGAGTTAGAATATCATCTTTTCATTCATGACGAAAAATGGCCGTTCGCGTGCACCATGTGCGGATTTAGAACTTCTTTGAAGGAACGCGTCAGAGTACATCTAAGGATACATTCCGATGAGAAACAGTACATGTGCAAGCTTTGCGGTTTTAAATCTTTAACCAAATGCAGTTTAAAATTACACGTTAGACGTACTCATTTCGGTGAAAAACCATTTTCATGCGATGAATGTGATAGCAAATTCGCTGCTAAGAGGACTTTGAAATGCCATTATTTATCGAGGCACTGCATTAAAGAGAAACCGTTTTTATGTCATATGTGCGATAAAACATTTAGGTTCCAAGGCGGACTAGCTACTCATTTGAAAAATCATACAATAAAAAAAGAGAAAAAATTCACGTGCTCAACTTGTGGGTTTAAAGCCCAAATCAAAGGCAATTTGATTGACCATATTAGGACGCATACGGGTGAGAAACCTTACGCGTGTCGTTTATGTGATCGTAGGTTCGCGCAAAAAAGCGCTTTAAACCGTCATGTCAAACTGCATAAGAAGCAATCCTTAGCATCACATATAAAAACGAAGCATATCGATGAAAAACCAGTATCTTGTGATATTTGTGATTATAGATGCGTAGATAAAACATTGCTAAGGAAACATTACAGACGCTTGCATATCAGAGAAAAAAAGTGTCTTTGTCATATCTGTGATTACAAATGTGTGGCACCTGACAGATTAAAGGCCCATTTGGAAACTCATAAAAAAAAGATCGAAAAAAATTATAAATATACTTGCAGCGTCTGTGGACACAAGTTTCTAGAGAAAGGCGCTTTCACCAGACATTTTAGAATCCATACCGGAGAGAAGCCATATGCTTGTACAGTTTGTAATCTAAAATTCAACCAGACAAGCTCTTTAAAATCGCATTCTAGAAGAATTCACAACAAAGAATAG
- Protein Sequence
- MLLTGAPTIKKERPTTSKHRPVKADGAAETKMRRKRFAXXXXXXXXXXXXXXXXXIRSHTGYKPFKCDKCDFKTAAPCALKRHEMTHTGEKPFLCDRCDFRSATKGGLKRHLMTHTGEKPIACNQCDFKTATRSDLKRHIMIHTGEKPFSCDRCDYKCAEKGAPTTKKHRPSTSTTDGVAAAPVKRNKFACVDSNYKSSWKYNFKLHLRSNTGKKPFKCGKCDYKAAQKSQLKQHLMSHTGEKPFQCDKCDYKAAQKSQLKQHLMTHTGEKPFQCDKCDYKTIAVSFLKQHLLRHTDEKPFMCDKCDFKSSRKGGLKRHLMTHTGEKPFLCERCDFKSATKGGLKRHLMTHTGEKPIACDQCDYKATQTIDLKRHLRTHTGEKPFKCTKCKYKCTRKESLKQHFMLHTGEKPFACDKCDYKSTNKGNLNLHLITHIGTKPFLCDKCDYECISNGALKRHLMIHTGEKPFSCDKCDYKSCDKGTPDIKKPNTLEVITRQKKGGFSEKTKFACDYCDKNDYSYADSLKQHLQKFHSDKKPIICDFCDHETLNKSLLESHVTRLHKEGKEFVCYICEYASSSKTEFIEHLKIHTGTKAFTCSLCETKFTRKNALKTHLDTVHKEELSKSDGTNITAAVVDKDVDDLIERIYPDKLSFSCDRCDFKCGFKFELEYHLFIHDEKWPFACTMCGFRTSLKERVRVHLRIHSDEKQYMCKLCGFKSLTKCSLKLHVRRTHFGEKPFSCDECDSKFAAKRTLKCHYLSRHCIKEKPFLCHMCDKTFRFQGGLATHLKNHTIKKEKKFTCSTCGFKAQIKGNLIDHIRTHTGEKPYACRLCDRRFAQKSALNRHVKLHKKQSLASHIKTKHIDEKPVSCDICDYRCVDKTLLRKHYRRLHIREKKCLCHICDYKCVAPDRLKAHLETHKKKIEKNYKYTCSVCGHKFLEKGAFTRHFRIHTGEKPYACTVCNLKFNQTSSLKSHSRRIHNKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -