Ipur041051.1
Basic Information
- Insect
- Icerya purchasi
- Gene Symbol
- ush
- Assembly
- GCA_952773005.1
- Location
- OX731681.1:50932342-50953697[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0081 4.2 10.0 0.1 2 20 241 259 240 261 0.89 2 8 9.3e-05 0.048 16.1 3.5 1 23 315 337 315 337 0.99 3 8 0.0057 2.9 10.5 1.2 2 21 364 383 364 384 0.92 4 8 0.078 40 6.9 3.4 2 21 775 794 774 795 0.93 5 8 9.6e-05 0.05 16.0 0.1 2 20 883 901 882 903 0.94 6 8 0.013 6.7 9.3 0.4 2 23 955 976 954 976 0.96 7 8 0.039 20 7.8 0.4 1 23 982 1004 982 1004 0.95 8 8 0.037 19 7.9 0.3 3 21 1182 1200 1181 1201 0.93
Sequence Information
- Coding Sequence
- ATGGACACAGCTGGCGATGAAGATGCCTGTTGGGGTGGTAATGGAGAAAACGAGAAAATGCCGGAAAACTTGGAAAATGGATACGGCGATAAAGAGCTGTTATCTTCTTCTTCGCCTTCTTGCTCGCCGACCGCCGATTACCATCGAAAATCGGTGTCGCCCGTTCCCAAAGCGACCGAGACCGCTTCCGCCGTTGTCCCCGCCGAACCGTCGTCAAGCCCAACCGGAAATTGTACAGATAGCCCAGCCGTGTCGACGGGCGGTCTGCGGATAAACGCGCTACTGGCAACGGATCCGGCTAAAAGAGTCTCGACAGCGACGGCTACGGTTAAATTGGAACCGCCGTCGATTCCGGACGATCAAGTCGAACTGCTGGCACCGGTCAGCGGTGAACAGTCAGTAATCAAAAGGATCGTCAACGCGACCAGCAGTACTGCCGGCTGCGTTACGGATACTCAAGTCAACAATGCGGATGTAAAACGGCAGTCGCCGTTGACCTTCGTAGCCATTAAAAACGAACACGCACCGACCGTTGCGCTCCCGGCAAATTTTAGTCTTCAACCCGATCCGGTTATATCGTCTCAGTCAGCTTCGAGAATTCTAAACTGTCCAGGAACGTCACAGTCATCATTGCCTGCTCCGTCGACGGTGTCATGTTCCGTGGTAGAACTGCCCAGATCAAAGGTTGACGCATCTACCGATACCAGTAAACAAGGTTATCTTTGTTCGCCGTGCGGAATAAAATTTAGTTCATTGAGCACATTGGAAGCGCATCAGACTTATTATTGTTCGCATAGGCCGAAGAAGATGAGTAAAGGCTCTACGGAAAGCGAAAGTGAAGATAGTCGTACATTTTCCGGTTATGATCAAGAAGATTCTAGCGGCGGAGAGACAATGGCCATCGAATCTCCAGTCAATAAAGCTTGTAAGACCGGGAAACAGTACCGATGCACTCACTGTTCGTATAGTGCCGATAAAAAAGTCAGCTTGAATCGTCATATGCGCATGCACAGTGTTTCACCGGCAACCAATGATTCGGACTCTGCCGGACCAGCATCGCAGCCGCAGCAGTCATCTTCCATCGATAGATACTGTCAGGAATGCGAtattcgtttttcaaatttaaaaacctTCCGTGCCCATAAAATGCACTATTGCAGTACCAGAAATGTCATCAAACAAGCTGTCGTCAATTCTTCCAGACCTTTGTCACCGTCTACCCTACCGCCAACAGTAGCTGACCCCATGGCTGCCTCGTTGATACCGCCGATTAACATTCCAAACGGTGTTACTGGCGTAGCCACTCAACCACCGTTCTTGGCTTTACCGACTAATCCTATACTTATTGTCCCCTATTCGTTGATGCAAGGAGCTAGTGTCCTGTCCACTCCACTTGTGTCCAACGTAGCTTCCCAGAATGCGGTTTACTTTTTACTTCCGGATGGATCTTTGCAACTCGTTACTCAGTCGGTCCAACCGCTTTCTCACAACATTTCTAATATTGCTTCTGTTTTACAGCCGACACAACCGAATCAAATATTACAGACAAGAGAAATACCGGAtgggaaaaattcgaaaatatatcCGAATTCGCTGTCAGTAGCCGGACCGTTAGATTTAAGTTTAAGGAAAAAATCGATGGATCGCGAAAGTGAAATGTacgaagaagataaagaaaatcGTCATCACGAATTCGATAATACGGACGATCACGAAGATATCGTTTGTGCTCCGTCGATTCCGTTATTGCTTTCTACATCGTCTAATTCGTCCACACCTTCTCCGTCGCCACTTTCGCCGCCCGCACCGAAGTTAGATAAAACTATGAGCAGCCCTCCCGCGCCGAAATTAAGTCCGAATCCGCCGCCTATGTCGAAGTCACCTAAACGTGTTTTTAATGGCGTTATAAAGAATGGCTGCAAAAAGGATTATCTTGACGGTGGTAAAGTTGTGCCAGAATTTAGTCCTGGCAACGGCGACCATCGATTTATCGCCGATGTTCTGTTCAGTGCTGCTGCTGCAGCAGCTACCGCATCGAAAAATCCTTTAGGAATAGATCATCCGTCGAGAGAATTGCCGTTTTCACCTGATATTTTGTCTTATCTGGCGGCGCAAACGGCTGCCGCGGCAGCGTCGTCTTCCTCGTCGGCAACTAGAAGATCACCGGCGACAACCACGCCGTTGCTGTTGCCAACGTTGCCACCGCAGACAGCTCCACCTTCGGCGCAGAATCTTCCGTTTTTAACATCGGAAATGGTTCGCCTAGCGGCTGCTTCGAACGTCGCCTGTCCCGCTTCGCCGTTTATTAGACAGGGTATGTGGAAGTGCGAAGATTGCCACATTGGTTTCTgtaagtatgaaaattatttgGCGCATAAGAAGCACTACTGTTCCACTCGGAACATACGCGACGGTTCTTCGGGTTCTTCTCATCCGGACGATGCGCAAAAAACTAGTCCAGCTGGATCTCCCGTAATGAAGCCTTCATCGCCAGCACAACAGCCGACAGTCGCTGCCAAAGATGGTGCCAGTCCGCCAGCATCGAATCCGATTGTCGTTAATCAAAATAATGCTACTAATGCCACTACTGTTGTTCCTAATACCGGGACCGGCGGCAGTAATGCGAAGCAAGTTTTTCTTCACGTAGTCTGTAATTTATGCggaattaaatttacatcgttGGATAATTTAACGACGCATCAAGCTTTTTACTGCACGAAGCGGAACGTTATCCAAGAAACCGCGGATAAATCTAGTCTCAAATGTTGTTCCAAGTGTAAGGCTTTGTTACCAATGGATGAGTTACCGATCCATCAGTGCGGCACCGTTGGAAATGCACCAGCAGTGAACTCTGGTGGATGGAAATGTCCATGCTGTTTCGTGACGTTCGCAACGGCTGATGCTGTCCAGAAACACATCCAGTCTCATAACGGGATCAAAGCGTTCCTGTGcacaatttgtaattataaaggaaatacCATCAGAGGCATGCGTTCTCATATTAGAGTACATTTCAATAAGAGAAATGTTGAAGTTATGGAAGAGAATTACATTACTTGCGTATTAGAAGAAAATAGTTCATCGGCTGCCAACGAAGATACAACTGCATCGTCGGAGAAGAAATCTttgccgaataataataataataataatagtaataatcataataataataataataataataacaataacaagtCATCCAGCGACGAAATAGTTTGTAACGGCGAAGCGACGCGAAGACAACGCGTGGATTCGGTAGCCACAACCTCCGGAGCCGAAGAAGACGACGATGAGTATATAGACGTCGGTGAAATTTCGCCAAGtgtaaaaacggaaaatttaacaaagtCGCTCAGCGGTACGGAGGACGGTTCTGTTAAAGAACACCGAAGCGAACGGCGATTGTCGCCGGTGGAAAATTCTGTCGCGGCAGAAGATTCTGCAGCGGCAGTTGCCATTAACAACAACAGTAAGAGCGGCGAAAATGGTACATCCGCGGCCATGAAACCGGGACCGCTGACCAGTGCCAATTCTAATTATTGCGAATCGTGCAATATTTCCTTCAACTATCTGTCCACTTTTATAGCGCACAAGAAGTATTACTGCACTACTAAACGTGTCCTGTTGAACGTCAGTAGTGATGTCTCTTCACCACCGCCGTTAAATTCGATCGAACCGATTTCAGTTCCGATTGTAAATGTCACTTCCGAAGCGGCCATTCAAATAATATAA
- Protein Sequence
- MDTAGDEDACWGGNGENEKMPENLENGYGDKELLSSSSPSCSPTADYHRKSVSPVPKATETASAVVPAEPSSSPTGNCTDSPAVSTGGLRINALLATDPAKRVSTATATVKLEPPSIPDDQVELLAPVSGEQSVIKRIVNATSSTAGCVTDTQVNNADVKRQSPLTFVAIKNEHAPTVALPANFSLQPDPVISSQSASRILNCPGTSQSSLPAPSTVSCSVVELPRSKVDASTDTSKQGYLCSPCGIKFSSLSTLEAHQTYYCSHRPKKMSKGSTESESEDSRTFSGYDQEDSSGGETMAIESPVNKACKTGKQYRCTHCSYSADKKVSLNRHMRMHSVSPATNDSDSAGPASQPQQSSSIDRYCQECDIRFSNLKTFRAHKMHYCSTRNVIKQAVVNSSRPLSPSTLPPTVADPMAASLIPPINIPNGVTGVATQPPFLALPTNPILIVPYSLMQGASVLSTPLVSNVASQNAVYFLLPDGSLQLVTQSVQPLSHNISNIASVLQPTQPNQILQTREIPDGKNSKIYPNSLSVAGPLDLSLRKKSMDRESEMYEEDKENRHHEFDNTDDHEDIVCAPSIPLLLSTSSNSSTPSPSPLSPPAPKLDKTMSSPPAPKLSPNPPPMSKSPKRVFNGVIKNGCKKDYLDGGKVVPEFSPGNGDHRFIADVLFSAAAAAATASKNPLGIDHPSRELPFSPDILSYLAAQTAAAAASSSSSATRRSPATTTPLLLPTLPPQTAPPSAQNLPFLTSEMVRLAAASNVACPASPFIRQGMWKCEDCHIGFCKYENYLAHKKHYCSTRNIRDGSSGSSHPDDAQKTSPAGSPVMKPSSPAQQPTVAAKDGASPPASNPIVVNQNNATNATTVVPNTGTGGSNAKQVFLHVVCNLCGIKFTSLDNLTTHQAFYCTKRNVIQETADKSSLKCCSKCKALLPMDELPIHQCGTVGNAPAVNSGGWKCPCCFVTFATADAVQKHIQSHNGIKAFLCTICNYKGNTIRGMRSHIRVHFNKRNVEVMEENYITCVLEENSSSAANEDTTASSEKKSLPNNNNNNNSNNHNNNNNNNNNNKSSSDEIVCNGEATRRQRVDSVATTSGAEEDDDEYIDVGEISPSVKTENLTKSLSGTEDGSVKEHRSERRLSPVENSVAAEDSAAAVAINNNSKSGENGTSAAMKPGPLTSANSNYCESCNISFNYLSTFIAHKKYYCTTKRVLLNVSSDVSSPPPLNSIEPISVPIVNVTSEAAIQII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -