Ipur068269.1
Basic Information
- Insect
- Icerya purchasi
- Gene Symbol
- -
- Assembly
- GCA_952773005.1
- Location
- OX731681.1:472880098-472897304[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.4 1.3e+03 2.2 0.1 1 23 256 282 256 282 0.86 2 13 5e-05 0.026 16.9 0.3 1 23 287 309 287 309 0.96 3 13 0.012 6.5 9.4 4.1 1 23 316 338 316 338 0.98 4 13 2.2e-05 0.012 18.0 0.5 1 23 345 367 345 367 0.98 5 13 2.4e-06 0.0012 21.1 2.6 1 23 373 395 373 395 0.99 6 13 0.0014 0.74 12.4 1.1 1 23 402 424 402 424 0.92 7 13 4.6e-07 0.00024 23.3 0.4 1 23 430 452 430 452 0.96 8 13 4.8e-06 0.0025 20.1 0.9 3 23 460 480 459 480 0.97 9 13 9.8e-08 5.1e-05 25.4 1.8 1 23 486 509 486 509 0.98 10 13 1.3e-06 0.00066 22.0 0.8 1 23 515 538 515 538 0.96 11 13 7e-05 0.036 16.5 3.0 1 23 544 566 544 566 0.97 12 13 5.1e-06 0.0027 20.0 0.6 1 23 572 594 572 594 0.97 13 13 1.3e-05 0.0068 18.8 0.3 1 23 600 624 600 625 0.94
Sequence Information
- Coding Sequence
- ATGTCAGCAAAGGACAAAGGAAATGTTTGCTTGATATGCGACGCTAGCATGTCCGTCTCAACTCGAAAATGTTGTCCCATATTTGAACAACGAATTTCAAATTCAGATCGTACCATAGTTTCCGTCATTAGTTATATATTAGGTATTAATTTGACCGAAGATGATGTACATAGTAATGTTATCTgtaagaaatgttttaaaatatgcaacgaAGTAGACGAATTAGAAGAAAGATTGGCAGAATTAAAGTTGGAACTTTCtagtaattatcaaaaaactttgAAGAAACAATCCGGTAGTAAATCCCCGAATCAAGATATTGGGTTCAGCGAGACATATAACAAAAGTCCGATAATTAAAAGAGGAAGAGGGAGACCACCATTAATCAAAAAAGAAGAGGATAACGATGAAAAAGAAATCATTATCGAGTTGTTGCATAGTCCAGGGGAAAATTCGTTTAACAATGACGTACCAAATGGGGAGGAAAATCCCttggaaaatgaaataatcgaagTTAACGGTGACGATTTGAGTTTAGACGATGAAGATGCCGATACGAATGTTGATAATGACGCTCTTCATGGCACTCGAATTAAAGCGGATAGCGATGAAGAATTTGTTCCGTATAAACTGACGAAAACgatgcagaaaaagaaaaaatcacccGGAGGAGGAATAACACGTAAACTCCGAGAAAACCAGTTGACCACTGATTGCATTCTAATTCCACAGATGGTTGTGTGTCGAGAAAATAACAGCAATACGTATAAATGCCTGATCTGTCCTCCGGAGCTTAAATTTACCGCGGATTCACGTGGAATTATCAATCACTTAAGGGACTCGCATAATATACGTGTCTACATATGCGATCTGTGTGGTAAGGAATTTTTCAGACGGCCCGAATTATCAAAACATCTCGATGAACACATCAAACGTGACGATACATACGAATGCGATATTTGCTGTCGTGTTTTCCGCAACTTCCGTCTGTATAGGGTTCACCGAAAAATGCATGTGTCGCAGCCAAAAAATTTCACGTGCGAAATATGCGGTAAACGTTACGGGTCTCGCAATCTGTTGGAGGAGCATAAGAATATGCACACTGGAAGGAGGCCATATCGTTGTTCGCtatgcgaaaaaaatttcacctctaaatatacattaaaagcTCACGAAAAGACGCATGAAGATCGGCCACGACCATATGCCTGTATTAACTGtgggaaaacatttttaacacaGCAGAATCTCATTCACCACGAACGGATACATTCCGGAATAACGAACTACATCTGCAAAGAATGCGGAAAATCATTTAATACTGCTAGAAATTTGGAAACGCATTTCATAGTTCACACCGGTTTTAAGCCGAATATATGTCGATTATGTGGAAAAGCATTTACGAAAAAAGTCGAATTACGAAGACATGAACGCAGTCATTCCGGTGAAAAACCGTACCAGTGCGAATTCTGCGGTGCATCATTcagTCAAAGGAGTAATTTGCAATCTCACAAACGAACAACTCATTACGATGATAAACGGTACAAGTGTACAGATTGCGGAAGAGCATTTAAAAGGCGTCGACTATTGGACTACCATATGAAAGCAGCTCATACTGGCGAAAGGCCTCATAAATGCGACATTTGTGATGCTACCTTTATTTATCCGGAGCAtttcaaaaaacataaattaattcatACTGGTGCAAAGCCGTATAAATGTGAAGTTTGTGGAAAAGCTTTCAATAGCAGGGACAATCGGAATGCACATCGTTTCGTACATAGTGATAAAAAACCGTATGAATGTCCGGTGTGTGGTACTGGCTTTATGCGAAAACCGTTATTATATAATCATATGAATACGGTCGGCCATCATCACGATACAATCGTCGTTAATCAGCCAAAATTAAGCGTAATTGAAGATGGAGAAAATTTCGATCAGCCGATAATTACCGAACCAATTGAAGAACCGTCTGCTGTTCAACATCTAGAAATGACTTTGTATACTGATACTGATGGcagtcaaaaattaattcacacTAGTGCTTTGCCTGCATCAttagaggaagaaaaatattacctaACAGATATAAAAGATCATGTTGTAATACCGAATTCTGTTAATTCAAGTCAAGGGGATAACGTACATATCGTCACTGCCCAAATTCTCTCAGCACTCAACGCCGTGTCCAACGTGTTCAGCCACGATCAACATCCAGTAGCCAAAGAAATTCTCAAATTAGTATCGTCGAGACCAGATCGGATAGTAACGTTTATGTGGATTCCTGTCCACGCTGGTATTCAAGGGAATGAATTGGCAAATATGACTGCAAAGGAGGCTGATGTTATTCTGCCGGTTCAGTATGCAACTCACGAATTAAATGATCATCGGATACACGAAAACAATCAACATCATAATCTGTCAAACAGCATCATATCCGATGGCATACAAATTCAAGCGAATGAAGATTCAATTTTGTCTGGAGAACCACATTCGCAAGCGAACAACTCGATTGCATATCACGAAACAGCGACACTAAAAACCGAAAATGGCATTCAAATTTTACAGATCCGAATTAACAACGATGCGCAACAGAAACAATGGCTGAATATTCTTCAAAGTCAACCTCAGTGa
- Protein Sequence
- MSAKDKGNVCLICDASMSVSTRKCCPIFEQRISNSDRTIVSVISYILGINLTEDDVHSNVICKKCFKICNEVDELEERLAELKLELSSNYQKTLKKQSGSKSPNQDIGFSETYNKSPIIKRGRGRPPLIKKEEDNDEKEIIIELLHSPGENSFNNDVPNGEENPLENEIIEVNGDDLSLDDEDADTNVDNDALHGTRIKADSDEEFVPYKLTKTMQKKKKSPGGGITRKLRENQLTTDCILIPQMVVCRENNSNTYKCLICPPELKFTADSRGIINHLRDSHNIRVYICDLCGKEFFRRPELSKHLDEHIKRDDTYECDICCRVFRNFRLYRVHRKMHVSQPKNFTCEICGKRYGSRNLLEEHKNMHTGRRPYRCSLCEKNFTSKYTLKAHEKTHEDRPRPYACINCGKTFLTQQNLIHHERIHSGITNYICKECGKSFNTARNLETHFIVHTGFKPNICRLCGKAFTKKVELRRHERSHSGEKPYQCEFCGASFSQRSNLQSHKRTTHYDDKRYKCTDCGRAFKRRRLLDYHMKAAHTGERPHKCDICDATFIYPEHFKKHKLIHTGAKPYKCEVCGKAFNSRDNRNAHRFVHSDKKPYECPVCGTGFMRKPLLYNHMNTVGHHHDTIVVNQPKLSVIEDGENFDQPIITEPIEEPSAVQHLEMTLYTDTDGSQKLIHTSALPASLEEEKYYLTDIKDHVVIPNSVNSSQGDNVHIVTAQILSALNAVSNVFSHDQHPVAKEILKLVSSRPDRIVTFMWIPVHAGIQGNELANMTAKEADVILPVQYATHELNDHRIHENNQHHNLSNSIISDGIQIQANEDSILSGEPHSQANNSIAYHETATLKTENGIQILQIRINNDAQQKQWLNILQSQPQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -