Ipur018435.1
Basic Information
- Insect
- Icerya purchasi
- Gene Symbol
- -
- Assembly
- GCA_952773005.1
- Location
- OX731680.1:295252986-295259318[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00032 0.17 14.4 2.3 2 23 135 156 134 157 0.95 2 17 1.4e-05 0.0073 18.7 2.7 3 23 159 180 157 180 0.95 3 17 0.0056 2.9 10.5 1.3 1 23 186 208 186 208 0.95 4 17 4.4e-07 0.00023 23.4 2.8 3 23 217 237 215 237 0.95 5 17 1.6e-06 0.00084 21.6 2.2 1 23 243 265 243 265 0.98 6 17 1.7e-07 8.7e-05 24.7 0.3 2 23 272 293 271 293 0.97 7 17 4.4e-05 0.023 17.1 1.7 1 23 299 321 299 321 0.97 8 17 3.8e-06 0.002 20.4 1.2 1 23 327 349 327 349 0.97 9 17 0.069 36 7.0 0.5 1 23 355 377 355 377 0.95 10 17 0.00011 0.057 15.9 5.0 1 23 383 406 383 406 0.97 11 17 2.8e-07 0.00015 24.0 0.6 1 23 412 434 412 434 0.98 12 17 0.00025 0.13 14.7 3.0 1 23 440 462 440 462 0.95 13 17 1.6e-07 8.3e-05 24.8 0.8 1 23 468 490 468 490 0.95 14 17 4e-07 0.00021 23.5 6.8 1 23 496 518 496 518 0.99 15 17 0.0015 0.79 12.3 0.7 1 23 524 546 524 546 0.96 16 17 2.5e-05 0.013 17.9 2.8 1 21 552 572 552 573 0.97 17 17 0.38 2e+02 4.7 6.6 1 23 579 601 579 601 0.97
Sequence Information
- Coding Sequence
- aTGAGAATATGGAAGGCAAATAGTGTTATGTTAACGcctGGAGATGTTCTAGAAGCGTTAATTAACATAGAAACAAAAGATCTGAAGAATGCAGAAATTAATAGAGACCTAGAAGCcgatttgaacattttaaatgaacaacTTAAAACAGAATCTGAAGCACGATCGGCGACGGTGATACAGTGTATCCCCGATGTTATGGTGATGCAGCAGTCAAAGCTGGATATAAATCTAGCTTGGAAGAAGTGTAGGAAAATAATGCCATATTTGTTAATTGACAACGACTCCTCTCCTTTACTCTGTACTAATGCAGTCGCAAACTTCAGTCAGCACCGTGATAGTTCGGTTAGTGAGAAAACTGGAAATAGCGGTTCGTTAACGAAAAAGCGGGACGATTCTGACGAGtgtaatttttgtcaaaaactgTTCCGAAAACCCGGGAAACTCGACCGACACGTTAGGAAACATCATTTGTGTAAGTTTTGCAGTAAAATATTCAACGATAAACGGGCTCTTAAGAAACATATTAAAACCAGCCATACCGGGAAATCACCGTATTTTTGTCAACGATGCTCGAAACAATTTGACAATGAACGAACGTTAAACGAACATTCTGAAGTTCATTTAACCGATAGCCACCGTCATCTATGCCGTTACTGCGGTAAACAGTTCAGTCAGAAATCCGATCTAAACAGGCATGCTAGAATACATAGTTTGGAAAAACCGTACAGTTGTCGTCTTTGCGAGAAAAGCTTCAACCAAAAAAGCACCCTGAACCGAcatgaaaaaatacataccgGTGAAAAGTTACAAGTGTGCGAATTTTGCGGCAAAGGATTCGTTCAGAAGTCGGATTTGGAACGGCATACTAGAGTTCACACGGGCGAAAGGCCGTTCGAATGTAAGCAGTGCAGTAAAAAGTTCGTTTCGAAATACCTATTGGATAAGCACGGCGAAACGCATAACGCGATAAAATCGTTTCAGTGCGATCGTTGTGATCGTTCGTTCGTGACGAAGGCGATGCTAAATAAACACACCGGCAGACATACGCGAAAGAAACAGTTCATCTGCGAACGTTGTTCGAAAGAATTTTTGAACAAAGCAGACTACGATCGTCACAGTTTAATTCACATCGGCGTAAAGTTGCATAAATGCGAAAAATGCGATAAATACTTCCACCAGGAGAGCACCGCTAAACGTCATATGCGTATAGTTCATTCGAAGGAAAAGTTGTTCGTCTGCGATTATTGCGATAAGCGGTTTGGCCAGAAATCAGACCTCGCTCATCATATAGCCGTTCACGCGAACACACAACGTTTCCTTTGCGGCGAGTGCGGCAAACGATTCAGTAAGAAACAGCACTTTGACGATCACGTGAAAAATCATCGCTTCGGTAAAATTTTTCTGTGCGATATTTGCGGTAAACAGTTTACCCGCCGGTCAAATCTGAACGATCACGCAAAAATGCATGCCGTCGATGAACCGTTTACGTGTAAATATTGCGGTAGGACGTTCACGCGAAAAATGTGTTTGAAGCGTCACTTAAATACTCATCTGGACGGAGAAATATACCTCTGCTGGTTTTGCAGCAATCAATTTAAGCGTAAAGCCGCTCTTGACGATCACATTAAAACCCATACGAAAGAACAGCCGTACAGTTGTAAACGATGCTCAAAGCGGTTCAGTTTGAAGACGAACTTGAATAAACATATTCGTTTTAATCGCTGCCGGATTTTCGTTTGCTACCATTGCTGCAAACAGTTTGCCAAGAAGAAATATATGAAAGAACATATTACAGTTCATAGTGAAACCGGCGTCGAAAAATCAGTTCATTCGCAAATTCGTAATTGGGAAATGACTTTTAAAACCAATATTCTTTCCTAA
- Protein Sequence
- MRIWKANSVMLTPGDVLEALINIETKDLKNAEINRDLEADLNILNEQLKTESEARSATVIQCIPDVMVMQQSKLDINLAWKKCRKIMPYLLIDNDSSPLLCTNAVANFSQHRDSSVSEKTGNSGSLTKKRDDSDECNFCQKLFRKPGKLDRHVRKHHLCKFCSKIFNDKRALKKHIKTSHTGKSPYFCQRCSKQFDNERTLNEHSEVHLTDSHRHLCRYCGKQFSQKSDLNRHARIHSLEKPYSCRLCEKSFNQKSTLNRHEKIHTGEKLQVCEFCGKGFVQKSDLERHTRVHTGERPFECKQCSKKFVSKYLLDKHGETHNAIKSFQCDRCDRSFVTKAMLNKHTGRHTRKKQFICERCSKEFLNKADYDRHSLIHIGVKLHKCEKCDKYFHQESTAKRHMRIVHSKEKLFVCDYCDKRFGQKSDLAHHIAVHANTQRFLCGECGKRFSKKQHFDDHVKNHRFGKIFLCDICGKQFTRRSNLNDHAKMHAVDEPFTCKYCGRTFTRKMCLKRHLNTHLDGEIYLCWFCSNQFKRKAALDDHIKTHTKEQPYSCKRCSKRFSLKTNLNKHIRFNRCRIFVCYHCCKQFAKKKYMKEHITVHSETGVEKSVHSQIRNWEMTFKTNILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -