Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.1e-12 1.4e-09 39.5 0.0 1 39 134 173 134 177 0.90

2 4 2.1e-12 2.8e-09 38.5 0.1 2 38 189 225 188 230 0.89

3 4 7.6e-19 9.7e-16 59.2 0.0 2 45 244 288 243 288 0.98

4 4 0.1 1.3e+02 4.3 0.1 1 13 295 307 295 307 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.1e-12	1.4e-09	39.5	0.0	1	39	134	173	134	177	0.90
2	4	2.1e-12	2.8e-09	38.5	0.1	2	38	189	225	188	230	0.89
3	4	7.6e-19	9.7e-16	59.2	0.0	2	45	244	288	243	288	0.98
4	4	0.1	1.3e+02	4.3	0.1	1	13	295	307	295	307	0.90

Coding Sequence: ATGATACTTGAACACTGTCATCAGCGAAGAGACGATGAAGGTGATATTTTACCGGACGCGCAGCCTGTGGGACCTACAGCTACTCCGGTCAAATGTCTATCAGTTAGTCCGTCACATCGTGATATGGGagTAGATACGTCGAGTATACGTGAAGAGTATATGGTGGATGAAACGAAAGTAAAATTCGAAACTTTGAGAACGATGGACTCCACTTCAGATAGCATGGATACTTTGGAAAACCACATGTCTTCAGATaggAGCATAAACGAGGATGATCATACGATGCATACAATGATGATAACACCAGAATTACTCGGTCTCATTCCGTCAAATTCTTCAAATACCGCTtcagAAGTGGGTAGTGATAGTGAAAAATGTCCGACAATGTCAAAAGCGTGGACTCAAGATGACATGGAATTAGCATTAGATTCGTTGCGTAATCGTCAGATGAGTTTAACAAAAGCTTCAATTACCTATGGTATACCATCTACGACGTTATGGCAACGCGCGCACAGGCTTGGTATCGACACACCGAAGAAGGAAGGTACTACAAAGTCTTGGAATGAAGAGGTTTTAAATGCGGCTTTAGAAGCTCTTCGAACTGGCACTATATCGGCTAATAAAGCTAGTAAAGCATACGgTATTCCGAGCagtacattatataaaatagctagGAAGGAAGGAATTCGTCTAGCAGCTCCGTTTAATGCCGCCCCGACCTCGTGGAATCCGGAAGATCTTGAACGAGCTTTAGATGCTATACGCACAGGACAGATTTCGGTACAACGAGCTGCCACTGAATACGGAATCCCATCCGGTACTCTCTACGGAAGGTGTAAACGAGAAAAGATCGAACTGTCCAGAAGTAATCCCACACCTTGGTCTGAAGATGCGATGACGGAAGCTTTGGAAACCGTAAGGTAA
Protein Sequence: MILEHCHQRRDDEGDILPDAQPVGPTATPVKCLSVSPSHRDMGVDTSSIREEYMVDETKVKFETLRTMDSTSDSMDTLENHMSSDRSINEDDHTMHTMMITPELLGLIPSNSSNTASEVGSDSEKCPTMSKAWTQDDMELALDSLRNRQMSLTKASITYGIPSTTLWQRAHRLGIDTPKKEGTTKSWNEEVLNAALEALRTGTISANKASKAYGIPSSTLYKIARKEGIRLAAPFNAAPTSWNPEDLERALDAIRTGQISVQRAATEYGIPSGTLYGRCKREKIELSRSNPTPWSEDAMTEALETVR

Sequence clustering based on sequence similarity using MMseqs2